PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G22620.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 347aa    MW: 35982.2 Da    PI: 10.3695
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G22620.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06152177227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +     Ck G++C+FaHg+
  ORUFI06G22620.2 152 KTRMCNKYNTAEGCKWGSKCHFAHGE 177
                      89**********************96 PP
2zf-CCCH36.39.4e-12312337127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  ORUFI06G22620.2 312 FKTKLCENFNK-GSCTFGDRCHFAHGE 337
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.9E-14147182IPR000571Zinc finger, CCCH-type
SMARTSM003560.97150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727150178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-8150181IPR000571Zinc finger, CCCH-type
SMARTSM003221.5E-10217287IPR004087K Homology domain
PROSITE profilePS5008414.802218282IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.0E-15218286IPR004088K Homology domain, type 1
SuperFamilySSF547914.68E-15220312IPR004088K Homology domain, type 1
CDDcd001054.63E-13220282No hitNo description
PfamPF000137.4E-11220283IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.0E-17309344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-9311342IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7311337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131311338IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9312337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGKAGSSTNL EAVPTAPRTV PTRFNLTHHH SPSGSLVASR LVSCSARLHP PREREREGGS  60
KPYLGFCPPT ALAVDAMEAG GGKRAAPEGT NGAAKRARVL LAVLLVQVVI FSITSLAAAK  120
MTSHGGTAVA APPGRMPLGP GAPNGPPTSS VKTRMCNKYN TAEGCKWGSK CHFAHGEREL  180
GKPMLLDNSM PHPMGSMPFE APPMPGPDIV PPSTFGASAT AKISVDASLA GGIIGKGGTN  240
TKHISRMTGA KLAIRDNESN PNLKNIELEG TFDQIKHASA MVTELIVRIS GNAPPAKNPG  300
RGSHAGGPGS NFKTKLCENF NKGSCTFGDR CHFAHGESEL RKPPAAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036090.0AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641069.11e-177zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ31e-178C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0E0Q0700.0A0A0E0Q070_ORYRU; Uncharacterized protein
STRINGORUFI06G22620.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-46C3H family protein