PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G22620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 371aa    MW: 38467.7 Da    PI: 10.1693
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G22620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.24.9e-07110134226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      k ++C  f+ t  C++G++C+F H 
  ORUFI06G22620.1 110 KLKPCTKFFSTSGCPFGSSCHFLHN 134
                      6689********************7 PP

2zf-CCCH19.71.5e-06176201227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +     Ck G++C+FaHg+
  ORUFI06G22620.1 176 KTRMCNKYNTAEGCKWGSKCHFAHGE 201
                      89**********************96 PP

3zf-CCCH36.21e-11336361127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  ORUFI06G22620.1 336 FKTKLCENFNK-GSCTFGDRCHFAHGE 361
                      69*********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.793108136IPR000571Zinc finger, CCCH-type
SMARTSM003560.08108135IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5110134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6110136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-8110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-14171206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-8174205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727174202IPR000571Zinc finger, CCCH-type
SMARTSM003560.97174201IPR000571Zinc finger, CCCH-type
SMARTSM003221.5E-10241311IPR004087K Homology domain
PROSITE profilePS5008414.802242306IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.8E-15242310IPR004088K Homology domain, type 1
CDDcd001055.66E-13244306No hitNo description
PfamPF000138.2E-11244307IPR004088K Homology domain, type 1
SuperFamilySSF547915.41E-15244336IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.3E-17333368IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131335362IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7335361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-9335366IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9336361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGKAGSSTNL EAVPTAPRTV PTRFNLTHHH SPSGSLVASR LVSCSARLHP PREREREGGS  60
KPYLGFCPPT ALAVDAMEAG GGKRAAPEGT NGAAKRARAS ESSQVGVGSK LKPCTKFFST  120
SGCPFGSSCH FLHNFPGGYQ AAAKMTSHGG TAVAAPPGRM PLGPGAPNGP PTSSVKTRMC  180
NKYNTAEGCK WGSKCHFAHG ERELGKPMLL DNSMPHPMGS MPFEAPPMPG PDIVPPSTFG  240
ASATAKISVD ASLAGGIIGK GGTNTKHISR MTGAKLAIRD NESNPNLKNI ELEGTFDQIK  300
HASAMVTELI VRISGNAPPA KNPGRGSHAG GPGSNFKTKL CENFNKGSCT FGDRCHFAHG  360
ESELRKPPAA A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036090.0AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641069.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ30.0C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0E0Q0690.0A0A0E0Q069_ORYRU; Uncharacterized protein
STRINGORUFI06G22620.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-62C3H family protein