PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G22620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 371aa MW: 38467.7 Da PI: 10.1693 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.2 | 4.9e-07 | 110 | 134 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H ORUFI06G22620.1 110 KLKPCTKFFSTSGCPFGSSCHFLHN 134 6689********************7 PP | |||||||
2 | zf-CCCH | 19.7 | 1.5e-06 | 176 | 201 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck G++C+FaHg+ ORUFI06G22620.1 176 KTRMCNKYNTAEGCKWGSKCHFAHGE 201 89**********************96 PP | |||||||
3 | zf-CCCH | 36.2 | 1e-11 | 336 | 361 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ ORUFI06G22620.1 336 FKTKLCENFNK-GSCTFGDRCHFAHGE 361 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.793 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.08 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-5 | 110 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 110 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.7E-8 | 110 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-14 | 171 | 206 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-8 | 174 | 205 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.727 | 174 | 202 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.97 | 174 | 201 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 1.5E-10 | 241 | 311 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.802 | 242 | 306 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 7.8E-15 | 242 | 310 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 5.66E-13 | 244 | 306 | No hit | No description |
Pfam | PF00013 | 8.2E-11 | 244 | 307 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 5.41E-15 | 244 | 336 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-17 | 333 | 368 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.131 | 335 | 362 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-7 | 335 | 361 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-9 | 335 | 366 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 336 | 361 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MGKAGSSTNL EAVPTAPRTV PTRFNLTHHH SPSGSLVASR LVSCSARLHP PREREREGGS 60 KPYLGFCPPT ALAVDAMEAG GGKRAAPEGT NGAAKRARAS ESSQVGVGSK LKPCTKFFST 120 SGCPFGSSCH FLHNFPGGYQ AAAKMTSHGG TAVAAPPGRM PLGPGAPNGP PTSSVKTRMC 180 NKYNTAEGCK WGSKCHFAHG ERELGKPMLL DNSMPHPMGS MPFEAPPMPG PDIVPPSTFG 240 ASATAKISVD ASLAGGIIGK GGTNTKHISR MTGAKLAIRD NESNPNLKNI ELEGTFDQIK 300 HASAMVTELI VRISGNAPPA KNPGRGSHAG GPGSNFKTKL CENFNKGSCT FGDRCHFAHG 360 ESELRKPPAA A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003609 | 0.0 | AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641069.1 | 0.0 | zinc finger CCCH domain-containing protein 44 | ||||
Swissprot | Q69XQ3 | 0.0 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A0E0Q069 | 0.0 | A0A0E0Q069_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G22620.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-62 | C3H family protein |