PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G22350.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 445aa    MW: 48430 Da    PI: 7.3574
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G22350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05278297120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  ORUFI06G22350.1 278 FSCPVCYKTFNRYNNMQMHM 297
                      89*****************9 PP
2zf-C2H213.90.00016362384123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F  + + ++H +++
  ORUFI06G22350.1 362 FMCRKCGKAFAVRGDWRTHEKNC 384
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.52E-5274300No hitNo description
PROSITE profilePS501579.743278305IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-6278297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45278300IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
SuperFamilySSF576672.8E-6346382No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5358382IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549362382IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808362382IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MHTHTQDTTT LPLHLSLFIT VVCLLLHPLC YLLFSFSSYL ELAPYYQSSS MGDPYTNFLR  60
GYHHHHRSHH PLHFPPPPPP PPPPYAASFS GLYSSYLHPP PPPSSPPIRE ALPLLSLTPS  120
TTHDDDHHHR RHDQDHHHHH KQGQEKNSHG GGGAASCSNN DDKRESPSAA AAADDQAAEV  180
TVALHIGLPS PSPSDAAAAA GNQAAAAAAA EASAAGGGSS RMQVEEEGGE EEDEDEAAAA  240
AATATLPLGC ASIGIGKLTK GQYWIPTPSQ ILIGPTQFSC PVCYKTFNRY NNMQMHMWGH  300
GSQYRKGPES LRGTQPTAML RLPCYCCAAG CRNNIDHPRA RPLKDFRTLQ THYKRKHGIK  360
PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC ACGSDFKHKR SLKDHIRAFG RGHAACGIDS  420
FDDLDADDDP SSDLDHASAS ASRVG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0711040.0AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642156.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-127ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0E0Q0380.0A0A0E0Q038_ORYRU; Uncharacterized protein
TrEMBLQ69WZ10.0Q69WZ1_ORYSJ; Os06g0612300 protein
STRINGORUFI06G22350.10.0(Oryza rufipogon)
STRINGOS06T0612300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]