PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI06G19240.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

BES1

Protein Properties

Length: 354aa MW: 37278.2 Da PI: 8.4697

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI06G19240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	209.3	1e-64	14	163	2	149
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspess 93 g++r ptw+ErEnn+rRERrRRaiaakiyaGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ e+++ +g+sas sp+ss ORUFI06G19240.1 14 GGTRVPTWRERENNRRRERRRRAIAAKIYAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPPqaERPDPIGRSASPSPCSS 107 789*********************************************************************99999*********** PP DUF822 94 lqsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvsss 149 +q +sp++sy++sp+sssfps+ s+++i++ + +sl+p+l++l+l+ss ORUFI06G19240.1 108 YQ--------PSPRASYNPSPASSSFPSSGSSSHITIGGNsliggvegSSLIPWLKTLPLSSSY 163 ........*************************98899*99*****99986664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	7.5E-70	14	157	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MTNGAGGGGG GGLGGTRVPT WRERENNRRR ERRRRAIAAK IYAGLRAYGN YNLPKHCDNN 60 EVLKALCNEA GWTVEPDGTT YRKGCKPPQA ERPDPIGRSA SPSPCSSYQP SPRASYNPSP 120 ASSSFPSSGS SSHITIGGNS LIGGVEGSSL IPWLKTLPLS SSYASSSKFP QLHHLYFNGG 180 SISAPVTPPS SSPTRTPRLR TDWENASVQP PWASANYTSL PNSTPPSPGH KIAPDPAWLA 240 GFQISSAGPS SPTYNLVSPN PFGIFKEAIA STSRVCTPGQ SGTCSPVMGG MPAHHDVQMV 300 DGAPDDFAFG SSSNGNNESP GLVKAWEGER IHEECASDEL ELTLGSSKTR ADPS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MTNGAGGGGG GGLGGTRVPT WRERENNRRR ERRRRAIAAK IYAGLRAYGN YNLPKHCDNN  60
EVLKALCNEA GWTVEPDGTT YRKGCKPPQA ERPDPIGRSA SPSPCSSYQP SPRASYNPSP  120
ASSSFPSSGS SSHITIGGNS LIGGVEGSSL IPWLKTLPLS SSYASSSKFP QLHHLYFNGG  180
SISAPVTPPS SSPTRTPRLR TDWENASVQP PWASANYTSL PNSTPPSPGH KIAPDPAWLA  240
GFQISSAGPS SPTYNLVSPN PFGIFKEAIA STSRVCTPGQ SGTCSPVMGG MPAHHDVQMV  300
DGAPDDFAFG SSSNGNNESP GLVKAWEGER IHEECASDEL ELTLGSSKTR ADPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-24	17	87	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-24	17	87	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-24	17	87	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-24	17	87	372	442	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101229	0.0	AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641160.1	0.0	protein BZR1 homolog 3
Swissprot	Q5Z9E5	0.0	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A0E0HS98	0.0	A0A0E0HS98_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0PZ17	0.0	A0A0E0PZ17_ORYRU; Uncharacterized protein
TrEMBL	B8B3K5	0.0	B8B3K5_ORYSI; Uncharacterized protein
STRING	ORUFI06G19240.1	0.0	(Oryza rufipogon)
STRING	ONIVA06G21540.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	4e-66	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]