PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G17680.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 561aa    MW: 63258 Da    PI: 8.7041
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G17680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.1e-11140165126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++t lC++++  G+Ck+G +CkF H+
  ORUFI06G17680.1 140 PGTGLCSYYMNRGICKFGTNCKFDHP 165
                      5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.1E-6139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6140166IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5142164IPR000571Zinc finger, CCCH-type
SuperFamilySSF483715.18E-31364521IPR016024Armadillo-type fold
PfamPF028546.8E-22369530IPR003890MIF4G-like, type 3
Gene3DG3DSA:1.25.40.1801.1E-30369521IPR016021MIF4G-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MTGSGGARLP SSSATARRRR SQSRRCWEDE EGGGAAPTAT GGAGLQLLRQ VRELQVRHQL  60
RVQPPGSEAA AWRRRQEAGR AVPAAARRAR LQLLRQVREL QVWDELQVQP PSPHASATTT  120
RGKSKVEQVK LNVLGLPLRP GTGLCSYYMN RGICKFGTNC KFDHPDPGSD HEKWVVSSNA  180
NQVSSQPGIP SFHQRISYTR DQLLQLCQNV EVPKDILKFC QDINVELNGE DKISGFGAEK  240
DHVSILPFSY VIMAEIVCAA LINVPQRCKV LYFIVQTPSY KRFDATDSRD WHSWSAQTNW  300
EQKFWDNFSE AKEPYSLGWK QEKFNKPDQS SFHFDSKDQQ DDPISVLVKA EVPLSIQRGI  360
ISGKDEVLKT LKSILNTFTP KMFDLQKGQL IETRISSADI LKDVINLIFE KVVAEPTFCS  420
TYAQLCTYLN QNLTPFPPED CDCEEITFKQ ALSNKCQEIF ESAHTVCSEI GKLIGQDREM  480
EQRDKERVVK LETLGNINFI RALLKKKLIT NKIIDHIVQV LKVLLNSAKQ FEDTRGLCST  540
TLHTANTPSN AKKNRTNPNI C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hu3_A9e-1436652210176EIF4GII
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015100.0AK101510.1 Oryza sativa Japonica Group cDNA clone:J033045L14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641849.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_025882269.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ5Z5Q30.0C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0E0PYJ70.0A0A0E0PYJ7_ORYRU; Uncharacterized protein
STRINGORUFI06G17680.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143301322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-11C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]