PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G14430.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 214aa    MW: 22062.7 Da    PI: 6.4253
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G14430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer50.26.2e-1661111453
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFH 53 
                      ++Y+eC kNhAaslGgh     +   +  g e +++++l CaACgCH nFH
  ORUFI06G14430.1  61 TVYQECPKNHAASLGGHGAGRLRGVHAVVGGEpTDPTSLMCAACGCHCNFH 111
                      78****************999999999888888****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.9E-1261111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-862111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152314.69663114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKLSTFATAA GAAADRSRGG GGKHGVRAAS RVGATGGVVA GDMAEVELLR RAQPAVGGGE  60
TVYQECPKNH AASLGGHGAG RLRGVHAVVG GEPTDPTSLM CAACGCHCNF HCWLLEGSPP  120
PPPPLALPAP PMPANVLHGQ LHREEETPEV RLPGVDGDES DNNSDGSEYY DERSVSPPSP  180
PHLPAPVVHQ PYYPSAQHML LSLGSSGQAQ RLPL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0612220.0AK061222.1 Oryza sativa Japonica Group cDNA clone:006-210-F04, full insert sequence.
GenBankAP0054490.0AP005449.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427E01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610599.17e-29zinc-finger homeodomain protein 9
SwissprotQ6ER216e-30ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A0E0PXD71e-151A0A0E0PXD7_ORYRU; Uncharacterized protein
STRINGORUFI06G14430.11e-152(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2165755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-10zinc finger homeodomain 1