PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G13430.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 364aa    MW: 40973.6 Da    PI: 8.1798
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G13430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-093151526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                      C f+++ G C+yG+rC++ H+
  ORUFI06G13430.1 31 VCTFYQK-GSCSYGSRCRYDHV 51
                     5******.*************7 PP
2zf-CCCH24.73.9e-08147168426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C+ fa++G C+yG+ C+ +Hg
  ORUFI06G13430.1 147 PICS-FAAGGNCPYGEECPQMHG 168
                      6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7562653IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-52752IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-52850IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-53050IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-73151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.713143170IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012144169IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5147168IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.09E-12200276No hitNo description
Gene3DG3DSA:3.30.40.104.8E-10205271IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.38E-4211271No hitNo description
SMARTSM001842.7E-7212269IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.297212270IPR001841Zinc finger, RING-type
PfamPF000972.0E-7212269IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180236245IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010314.089299328IPR000571Zinc finger, CCCH-type
SMARTSM003560.0047299327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001300329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSTKRLNKGS AGVACVYFAF LHILVLRTLQ VCTFYQKGSC SYGSRCRYDH VKVSRNPTVA  60
PPPSSSTTTR ASSSLQPLSF GRPHHVGYQA DSSNPRQQIS MDVLAHSGSK PVWRNDFQHE  120
SVLEDGIDWS ISPTVQNQTT LSPADLPICS FAAGGNCPYG EECPQMHGDL CTTCGKMCLH  180
PYRPDEREEH TKLCEKNHKR LESLKRSQEI ECSVCLDRVL SKPTAAERKF GLLSECDHPF  240
CISCIRNWRN NSPTSGMDVN SALRACPICR KLSYYVIPSV LWYFSKEEKL EIIDNYKAKL  300
KSIDCKYFDF GTGTCPFGSS CFYKHAYRDG RLEEVILRHL DADDGSTVIA KNIRLSDFLS  360
RLHL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206ESLKRS
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1202500.0AK120250.1 Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643585.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0E0HPT90.0A0A0E0HPT9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PX270.0A0A0E0PX27_ORYRU; Uncharacterized protein
STRINGORUFI06G13430.10.0(Oryza rufipogon)
STRINGONIVA06G14620.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-132C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]