PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G11220.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 420aa    MW: 45244.4 Da    PI: 5.9601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G11220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.3e-062613001255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  ORUFI06G11220.1 261 RREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 300
                      9*****************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.611249299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-12260317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0024260305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-7261304No hitNo description
Gene3DG3DSA:4.10.280.105.0E-13262314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNEKDATDLE ERSEASEHGQ ALSFHGGAMF LQEAQIASPA AANNALTSMA NPFPIPPGLW  60
NPPSHNMGLG ETSFSSLLGM LSAGAPPPFV ATPGFVDSTA GFPCYNGGNL GAMINHPFPG  120
IHQPLGDFQN CVEPCREIED IEIEGSKNVS QTGEKQQGDG ETTHAVDSSS KELSMPGRNG  180
GAGHDEGTRV SCSKKRKRSG QDGGVKHAEG GEQLATVGSA QKNEDDEKGE PKRSSVASGK  240
SSGKQIKDNA GSPKEDYIHV RREKISERMK YLQDLVPGCS KVTGKAVMLD EIINYVQSLQ  300
RQVEFLSMKL ASVNPTLDFN IERILSKDIF QCRGTTASSA FGFFPDIVHP RLHPPKYTQV  360
GMPSIVNPTD AFGRVIHAPL GTNSAFKEPK HQMPNNLNGE FQDVIEMPFT HDHHGSNDQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038530.0AK103853.1 Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence.
GenBankHQ8588720.0HQ858872.1 Oryza sativa Japonica Group isolate UT1748 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643533.10.0transcription factor bHLH49 isoform X2
RefseqXP_015643534.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A0E0PWC20.0A0A0E0PWC2_ORYRU; Uncharacterized protein
STRINGORUFI06G11220.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-54bHLH family protein