PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G09920.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-X1
Protein Properties Length: 1117aa    MW: 119810 Da    PI: 8.2027
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G09920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.64.8e-07387404118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H Cq +CH+GpC++C
  ORUFI06G09920.1 387 CGNHACQDICHPGPCGEC 404
                      ****************** PP
2zf-NF-X122.72.1e-07445462118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG H+C+ +CHeG+CppC
  ORUFI06G09920.1 445 CGVHRCKVTCHEGDCPPC 462
                      ****************** PP
3zf-NF-X116.42e-05540558119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H Cq lCH G CppC 
  ORUFI06G09920.1 540 CGQHGCQLLCHSGHCPPCL 558
                      ******************6 PP
4zf-NF-X118.73.7e-06650666117
         zf-NF-X1   1 CGkHkCqklCHeGpCpp 17 
                      CG+H C++ CH+ pC+p
  ORUFI06G09920.1 650 CGMHACNRSCHPSPCDP 666
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.53E-7146215No hitNo description
PROSITE profilePS500169153212IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.391156210IPR001841Zinc finger, RING-type
PROSITE patternPS013590156209IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.023268286IPR000967Zinc finger, NF-X1-type
PfamPF014228.4270285IPR000967Zinc finger, NF-X1-type
CDDcd060086.85E-12313361No hitNo description
SMARTSM004380.0019323342IPR000967Zinc finger, NF-X1-type
PfamPF014220.017323340IPR000967Zinc finger, NF-X1-type
CDDcd060083.57E-8377420No hitNo description
SMARTSM004382.3E-4387406IPR000967Zinc finger, NF-X1-type
PfamPF014221.2E-4387404IPR000967Zinc finger, NF-X1-type
CDDcd060082.23E-13435483No hitNo description
SMARTSM004380.001445464IPR000967Zinc finger, NF-X1-type
PfamPF014225.6E-6445462IPR000967Zinc finger, NF-X1-type
CDDcd060082.44E-8530582No hitNo description
SMARTSM004387.2E-4540559IPR000967Zinc finger, NF-X1-type
PfamPF014220.0017540557IPR000967Zinc finger, NF-X1-type
SMARTSM004380.62597615IPR000967Zinc finger, NF-X1-type
SMARTSM004380.029650685IPR000967Zinc finger, NF-X1-type
PfamPF014220.0025650666IPR000967Zinc finger, NF-X1-type
PfamPF014229.1687713IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16694715IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1117 aa     Download sequence    Send to blast
MSSSDRRRGG NGGGGGGPVA VPSSRAVWRP RSTAPDIPPP PRAAAPAPDR IGPILPSPNP  60
ASEDRPQQQQ RRPRRRNHGG GGQRRGPPQE RPSAAPPPPP PPQQQRQQHA APAPTRAAAP  120
APARVAATKA AAGGDGAVPQ LVQEIQDKLA RGAVECMICY DMVRRSAPVW SCGSCFSIFH  180
LPCIRKWARS PASAADASDP DSSWRCPGCQ SVHAVPAREL AYTCFCGRRR EPPNDLFLTP  240
HSCGEPCSKP LEKADPAVKA DDAAATRCPH VCVLQCHPGP CPPCKAFAPD RLCPCGKQTI  300
VRRCADRTTP VTCGQRCDRL LPCRRHRCEK VCHTGPCGDC NVLISARCFC GKKTETLLCG  360
EMELKGNLSE KDGVFSCSEA CSHMLSCGNH ACQDICHPGP CGECELMPGK VTACHCGKTR  420
LLEKRASCLD PIPTCDKVCD KKLPCGVHRC KVTCHEGDCP PCVVRVEQRC RCGSSGQMVE  480
CYKVLEEEFR CNKPCGRKKN CGRHRCSECC CPLSKPLARL EGGNWDPHLC QIPCGKKLRC  540
GQHGCQLLCH SGHCPPCLET IFNDLTCACG RTSIPPPLPC GTPTPSCPHQ CLVPQPCGHP  600
ATHQCHFGDC PPCVVPVMRE CIGGHVVLRN IPCGSKDIRC NQPCGKNRQC GMHACNRSCH  660
PSPCDPPPAN GDASSSTGGR ASCGQVCGAP RRECKHTCTA PCHPSSPCPD LRCEFPMTIA  720
CSCGRITATV PCGAGGTANG DNMFEVSIIQ KLPIPLQPVE SDGRRVPLGQ RKLSCDEDCA  780
KMERKRVLAE AFDITPPNLD ALHFGENSNA SDLLSDLFRR EPKWVMAIEE RCKFLVLGKT  840
RGNSSGNLKV HVFCHMTKDK RDAIRVIADR WKLSVQAAGW EPKRFITIHP TPKSKAPARI  900
LGSKPGVSVA ASHPFFDPLV DMDPRLVVAM LDLPRDADVS ALVLRFGGEC ELVWLNDKNA  960
VAVFNDPARA ATALRRLDYG SAYQGAAVFL PSSSAQPGNV WVAGQKDGVA ATKSSANPWK  1020
KATASEPDPS SGDWTGVLGQ APGSVWRRGG DTVAQVMGTS NRWNALESDA ATSSRPVEES  1080
KPAPRTDAVS SAGPSTAPPV SKMQPEVEVD DWEEACE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17075RRPRRR
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055180.0AP005518.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0046H10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0E0PVW20.0A0A0E0PVW2_ORYRU; Uncharacterized protein
STRINGORUFI06G09920.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1