PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G08380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 387aa MW: 38741.7 Da PI: 9.1688 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 133.6 | 1.8e-41 | 53 | 233 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ ORUFI06G08380.1 53 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlrla 146 789******************************************************************9999899999999988888999999 PP TCP 89 ....................................kaaksaakskksqksaasalnlakesr..akarar.are.rtrekmriknkln 137 + +s+ + s +s + l+++ s + a a+ +r+ r++++m+++++ + ORUFI06G08380.1 147 glagprfgggaraadawdrvvglgfggaadapssatS--SSSSPLLLSFHSGSVGLDVSPPSAstSPAAADlSRKrRWEQEMQQQQQYQ 233 999999999999999**********999999986422..33335555566666556666644422333333566668888888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-44 | 57 | 233 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.675 | 59 | 113 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MDVTGDGGGG GQRPNFPLQL LGKKEEQTCS TSQTAGAGGG GVVGANGSAA AAPPKRTSTK 60 DRHTKVDGRG RRIRMPAICA ARVFQLTREL GHKTDGETIE WLLQQAEPAV IAATGTGTIP 120 ANFTSLNISL RSSGSSLSIP SHLRLAGLAG PRFGGGARAA DAWDRVVGLG FGGAADAPSS 180 ATSSSSSPLL LSFHSGSVGL DVSPPSASTS PAAADLSRKR RWEQEMQQQQ QYQQQMAGYT 240 QSQIPAGTVW MVPSSNAQAA GGGAPPGGGG ESIWTFPQSG SGGGGGAATV YRGVPSGLHF 300 MNFPATPMAL LPGGQQLGLA GAGGGGEGHP GILAALNAYR AQAAQPDAGA AAQNGAQGSS 360 QHRQHQHHGG GGGGGDERHE SMSASDS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00224 | DAP | Transfer from AT1G69690 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064240 | 0.0 | AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence. | |||
GenBank | AP003513 | 0.0 | AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04. | |||
GenBank | AP003569 | 0.0 | AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641757.1 | 0.0 | transcription factor TCP15 | ||||
TrEMBL | A0A0E0PVC8 | 0.0 | A0A0E0PVC8_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2YAX0 | 0.0 | A2YAX0_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q67WL3 | 0.0 | Q67WL3_ORYSJ; Os06g0226700 protein | ||||
STRING | ORUFI06G08380.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS06T0226700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 1e-45 | TCP family protein |