PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G08380.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 387aa    MW: 38741.7 Da    PI: 9.1688
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G08380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.61.8e-41532332137
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++      
  ORUFI06G08380.1  53 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSIPshlrla 146
                      789******************************************************************9999899999999988888999999 PP

              TCP  89 ....................................kaaksaakskksqksaasalnlakesr..akarar.are.rtrekmriknkln 137
                                                          +  +s+ +   s +s +  l+++  s   + a a+ +r+ r++++m+++++ +
  ORUFI06G08380.1 147 glagprfgggaraadawdrvvglgfggaadapssatS--SSSSPLLLSFHSGSVGLDVSPPSAstSPAAADlSRKrRWEQEMQQQQQYQ 233
                      999999999999999**********999999986422..33335555566666556666644422333333566668888888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-4457233IPR005333Transcription factor, TCP
PROSITE profilePS5136927.67559113IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDVTGDGGGG GQRPNFPLQL LGKKEEQTCS TSQTAGAGGG GVVGANGSAA AAPPKRTSTK  60
DRHTKVDGRG RRIRMPAICA ARVFQLTREL GHKTDGETIE WLLQQAEPAV IAATGTGTIP  120
ANFTSLNISL RSSGSSLSIP SHLRLAGLAG PRFGGGARAA DAWDRVVGLG FGGAADAPSS  180
ATSSSSSPLL LSFHSGSVGL DVSPPSASTS PAAADLSRKR RWEQEMQQQQ QYQQQMAGYT  240
QSQIPAGTVW MVPSSNAQAA GGGAPPGGGG ESIWTFPQSG SGGGGGAATV YRGVPSGLHF  300
MNFPATPMAL LPGGQQLGLA GAGGGGEGHP GILAALNAYR AQAAQPDAGA AAQNGAQGSS  360
QHRQHQHHGG GGGGGDERHE SMSASDS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642400.0AK064240.1 Oryza sativa Japonica Group cDNA clone:002-105-B01, full insert sequence.
GenBankAP0035130.0AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04.
GenBankAP0035690.0AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641757.10.0transcription factor TCP15
TrEMBLA0A0E0PVC80.0A0A0E0PVC8_ORYRU; Uncharacterized protein
TrEMBLA2YAX00.0A2YAX0_ORYSI; Uncharacterized protein
TrEMBLQ67WL30.0Q67WL3_ORYSJ; Os06g0226700 protein
STRINGORUFI06G08380.10.0(Oryza rufipogon)
STRINGOS06T0226700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-45TCP family protein