PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G08090.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 203aa    MW: 22153.9 Da    PI: 5.0792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G08090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-171363155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr +  +g+WvAeIr p++   r r++lg+++t+e+Aa+a +aa   l+g
  ORUFI06G08090.1 13 KKYKGVRLRQ-WGKWVAEIRLPNS---RERVWLGSYDTPEKAARAFDAAFVFLRG 63
                     59*****998.**********933...5********************9887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.11E-231377No hitNo description
SMARTSM003803.3E-271481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-261477IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-181476IPR016177DNA-binding domain
PROSITE profilePS5103221.3771475IPR001471AP2/ERF domain
PfamPF008472.3E-101458IPR001471AP2/ERF domain
PRINTSPR003673.7E-91526IPR001471AP2/ERF domain
PRINTSPR003673.7E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MQTKNTAAPA PEKKYKGVRL RQWGKWVAEI RLPNSRERVW LGSYDTPEKA ARAFDAAFVF  60
LRGAGAADAA GLNFPDSPLP VVARTRDLRE VYAFAVSHAN RPPPVAGETA ATALAAMAAL  120
EHNEVRENIA PSSPLSAVQV AAPPAGSFDW SQLMANSPPL YSPIVIGSHA YDDLAVWPTT  180
QPVEEFSEED NENEELKVYI LRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13175172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055450.0AP005545.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0638H11.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882388.11e-138ethylene-responsive transcription factor ERF018-like
SwissprotQ84QC22e-29ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0E0HMV41e-145A0A0E0HMV4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PV921e-145A0A0E0PV92_ORYRU; Uncharacterized protein
STRINGORUFI06G08090.11e-145(Oryza rufipogon)
STRINGONIVA06G09060.11e-146(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]