PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G07300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 210aa MW: 23604.2 Da PI: 8.8842 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 147.3 | 1.5e-45 | 21 | 154 | 234 | 374 |
GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 ls kv+vv+eqe++hn++ + erf+eal+yy+alfd+le++ +r s er+ vEr llg+ei+n+vac g errerhe rle aGF+ v ORUFI06G07300.1 21 LSLKVMVVTEQEVSHNAAGLTERFVEALNYYAALFDCLEVGGARGSVERTRVERWLLGEEIKNIVACDGGERRERHE-------RLEGAGFGRV 107 6779************************************************************************9.......999******* PP GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 pls++a qa+++ + + dg++v ee+g ++l+W+dr+L+svSaWr ORUFI06G07300.1 108 PLSYYALLQARRVAQGLGCDGFKVREEKGNFFLCWQDRALFSVSAWR 154 **********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 15.841 | 1 | 134 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.1E-43 | 21 | 154 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MALTKEAERL DVPFQFNPVG LSLKVMVVTE QEVSHNAAGL TERFVEALNY YAALFDCLEV 60 GGARGSVERT RVERWLLGEE IKNIVACDGG ERRERHERLE GAGFGRVPLS YYALLQARRV 120 AQGLGCDGFK VREEKGNFFL CWQDRALFSV SAWRGRRFAA LLPLPPSTPL PCSRVIATLL 180 SSPPPPCSPL HPYCPERRER MKGEKKGKRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-20 | 20 | 154 | 231 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003458 | 0.0 | AP003458.4 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0701E03. | |||
GenBank | AP004687 | 0.0 | AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165765.1 | 3e-83 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 2e-53 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A0E0PUZ5 | 1e-151 | A0A0E0PUZ5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G07300.1 | 1e-151 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 2e-45 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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