PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G07280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 212aa MW: 22431.4 Da PI: 9.8662 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.4 | 5.3e-08 | 130 | 170 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P a +l+ a++Le+A++Y+k L ORUFI06G07280.1 130 ARLRRERVSQRMRALQRLVPGgA------RLDTASMLEEAIRYVKFL 170 699*****************966......9***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.659 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.72E-9 | 124 | 175 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.1E-11 | 125 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.59E-13 | 126 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-11 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-5 | 131 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEFDMAMDMM SQEQLMHIIS QLDSALASSP SPSTSPSASP PRQSPAAHVP VPPGLLNTTM 60 VSTSRAQAAP SAPLHPVAAT AAVQSSSRGI MYTTTRQGVI TAAAEEEEAA APRPRRRNAR 120 VSSEPQSVAA RLRRERVSQR MRALQRLVPG GARLDTASML EEAIRYVKFL KGHVQSLERA 180 AAALHMHGGH AAAAGFAGDA GDAVYSCPSY YA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 135 | RLRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004687 | 0.0 | AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882279.1 | 2e-99 | transcription factor HEC2 | ||||
TrEMBL | A0A0E0PUZ3 | 1e-148 | A0A0E0PUZ3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G07280.1 | 1e-149 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16110 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 6e-21 | bHLH family protein |