PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G06870.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 297aa    MW: 31943.6 Da    PI: 7.9544
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G06870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.82.2e-2483126144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCsr++++ +k+CE+H+hrg++rsrk++e
  ORUFI06G06870.1  83 DPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKPVE 126
                      79***************************************997 PP
2QLQ62.79.9e-221145236
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                      FTa+Q+q+L++Q+l+yKy+aa++PvPp+Ll++++
  ORUFI06G06870.1 11 LFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLR 45
                     5******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.4E-101046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.0391146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.8E-161244IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.71483127IPR014977WRC domain
PfamPF088791.5E-1984126IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMAGGGSGRC LFTATQWQEL EHQALIYKYM AAGAPVPPDL LLHLRHRAAA DVDTVPSLAF  60
PPHHLGWGCY GAAAAQYGRR VEDPEPGRCR RTDGKKWRCS REAYGESKYC EKHMHRGKNR  120
SRKPVEMPPP AAAAVYRPSA LSISPPPHDA DAPSYGAGAG APLQLHLDSF HASTSPPPSY  180
HRYAHTSSAP LFPSSAAGYG GGWSLSKEHC LTLGGAAADL SLDKPADHHH DATSATTEKP  240
LRRFFDEWPR SDDGRTPWDG TQLSISIPTA AAASPDLAIA GAASRYHSNG DHLRTSE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8361980.0CT836198.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA059E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641768.10.0growth-regulating factor 2
SwissprotQ6AWY70.0GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLA0A0E0PUU30.0A0A0E0PUU3_ORYRU; Uncharacterized protein
STRINGORUFI06G06870.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-37growth-regulating factor 5