PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G06250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 362aa MW: 39764.3 Da PI: 4.5227 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.6e-19 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg+f ++eeAa+a++a +++++g ORUFI06G06250.1 114 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDAEARRIRG 163 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.7E-35 | 114 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.314 | 114 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.28E-31 | 114 | 172 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-21 | 114 | 172 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-31 | 114 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 115 | 126 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-11 | 115 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MCGGAILSDL IPPPRRVTAG DLWLEKTKKQ QQQKKKNKGA RRLPLRQEEE DDFEADFEEF 60 EVDSGEWEVE SDADEAKPLA APRSGFAKGG LKNTTVAGAD GPAARSAKRK RKNQFRGIRQ 120 RPWGKWAAEI RDPRKGVRVW LGTFNSPEEA ARAYDAEARR IRGKKAKVNF PDGAPVASQR 180 SHAEPSSMNM PAFSIEEKPA VMSAGNKTMY NTNAYAYPAV EYTLQEPFVQ IQNVSFVPAM 240 NAIEDTFVNL SSDQGSNSFG CSDFSQENDI KTPDITSMLA PTMTGVDDSA FLQNNASDAM 300 VPPVMGNASI DLADLEPYMK FLIDGGSDES IDTLLSSDGS QDVASSMDLW SFDDMPVSAE 360 FY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 114 | 171 | 5 | 63 | ATERF1 |
3gcc_A | 1e-18 | 114 | 171 | 5 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF190770 | 0.0 | AF190770.1 Oryza sativa EREBP-like protein (tsh1) mRNA, complete cds. | |||
GenBank | AK060742 | 0.0 | AK060742.1 Oryza sativa Japonica Group cDNA clone:001-032-E01, full insert sequence. | |||
GenBank | AK069833 | 0.0 | AK069833.1 Oryza sativa Japonica Group cDNA clone:J023031B06, full insert sequence. | |||
GenBank | DQ849289 | 0.0 | DQ849289.1 Oryza sativa (indica cultivar-group) ethylene-responsive factor 15 (ERF-15) mRNA, complete cds. | |||
GenBank | EU837257 | 0.0 | EU837257.1 Oryza sativa Japonica Group clone KCS063A06 EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643752.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-120 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A0E0PUL5 | 0.0 | A0A0E0PUL5_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q0PEM0 | 0.0 | Q0PEM0_ORYSI; Ethylene-responsive factor 15 | ||||
TrEMBL | Q69Y47 | 0.0 | Q69Y47_ORYSJ; EREBP transcription factor | ||||
TrEMBL | Q9SP16 | 0.0 | Q9SP16_ORYSA; EREBP-like protein | ||||
STRING | ORUFI06G06250.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS06T0194000-02 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 2e-39 | related to AP2 2 |