PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI06G05560.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 431aa MW: 42911.6 Da PI: 6.5228

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI06G05560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.5e-12	226	271	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq ORUFI06G05560.1 226 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 271 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.16E-13	219	275	No hit	No description
SuperFamily	SSF47459	8.64E-17	219	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.282	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-16	223	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-9	226	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAS 60 QVFDESALLA SRLRHHQIGG AGGGGGEKPV MLQLSELHRQ AGGGEEDGSG AFSPLPLFTD 120 RTNVPPREEM EGGFKSPNAA AGGEHALFNG FGVHGGSGGA RAPVINLYDS NIKIVLFVGG 180 SMSGQSFGGP AASGGTAPVT SSGGGGTAPP RQQRVRARRG QATDPHSIAE RLRRERIAER 240 MKSLQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAGMAP LVASMSSEGN 300 SNGSSNGGGG KASKGGTGGE GGGGGGGGGG GGTGGGMRVT EQQVAKMMEE DMGTAMQYLQ 360 GKGLCLMPIS LASAISSATS SASLLSRPSI RHAGAPPQTM LDAAGPTSPA AMSNGDDPRH 420 AKADGGAGGT Q

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAS  60
QVFDESALLA SRLRHHQIGG AGGGGGEKPV MLQLSELHRQ AGGGEEDGSG AFSPLPLFTD  120
RTNVPPREEM EGGFKSPNAA AGGEHALFNG FGVHGGSGGA RAPVINLYDS NIKIVLFVGG  180
SMSGQSFGGP AASGGTAPVT SSGGGGTAPP RQQRVRARRG QATDPHSIAE RLRRERIAER  240
MKSLQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAGMAP LVASMSSEGN  300
SNGSSNGGGG KASKGGTGGE GGGGGGGGGG GGTGGGMRVT EQQVAKMMEE DMGTAMQYLQ  360
GKGLCLMPIS LASAISSATS SASLLSRPSI RHAGAPPQTM LDAAGPTSPA AMSNGDDPRH  420
AKADGGAGGT Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	235	RLRRER
2	316	332	TGGEGGGGGGGGGGGGT

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005919	0.0	AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642979.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	1e-70	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0E0PUC7	0.0	A0A0E0PUC7_ORYRU; Uncharacterized protein
STRING	ORUFI06G05560.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	1e-38	LJRHL1-like 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]