PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G04410.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 470aa    MW: 51966.6 Da    PI: 7.9478
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G04410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.61.2e-06199222123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C  Cg++F+++ +L+rH r  H
  ORUFI06G04410.1 199 YSCAVCGRRFPTRPDLTRHFRQlH 222
                      99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-5197225No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4198225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9E-4199222IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.256199227IPR007087Zinc finger, C2H2
PROSITE patternPS000280201222IPR007087Zinc finger, C2H2
CDDcd061678.42E-10217349No hitNo description
Gene3DG3DSA:3.40.50.10109.3E-4264338IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEAEWHIPSS PPNPKSASRL LPSLSITTPR PTPNQTPCGR DLAALAMPPP LSFLHLAANP  60
TPLHASPLRR ARLRHRLSLR TDHPSRRAVA SAGENPSTPG GPIADVEMVR GKDGVWTARP  120
PTVVVLWDLD NKPPRGPPFP AATALRDAAS LLGRVVSVSA FANRHAFSHV PAWVADERRE  180
RRAMDRAERA GAASPPVPYS CAVCGRRFPT RPDLTRHFRQ LHQRERNKKL SRLRSLKGKK  240
RQKFRERFIS GNTKYDDAAR ELLTPKVGYG LAAELRRAGV HVRTVSDKPQ AADHALKRQV  300
KHSVACGVDW LMLVSDDSDF TDTVRKARAA DLRTVVVGDG CRALGSVADI WLPWDRVENG  360
EVDEDMLRNG THMGLRDEEE DEQDDDEFIV DWDTSDLDGV VDDIVATRTK LFGATTMSAF  420
ADEEIMDGIL GVGINGGDML WSSDDEDEDG LVLYCYSANQ KASSHRHKHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0234820.0AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03.
GenBankAP0025360.0AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641376.20.0uncharacterized protein LOC4340243
TrEMBLA0A0E0PTZ60.0A0A0E0PTZ6_ORYRU; Uncharacterized protein
STRINGORUFI06G04410.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-103C2H2-like zinc finger protein