PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G03050.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 662aa    MW: 70453.9 Da    PI: 8.4455
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G03050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.3e-30331390159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  ORUFI06G03050.1 331 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 390
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-32316390IPR003657WRKY domain
SuperFamilySSF1182903.4E-27324391IPR003657WRKY domain
PROSITE profilePS5081128.311326392IPR003657WRKY domain
SMARTSM007743.4E-37331391IPR003657WRKY domain
PfamPF031063.2E-27332390IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAKTCRKLRT DINGGRAIRS YSGQTYAEQK EEEKELKADK NLRRRGELAS LYMKEEMIKG  60
DSKQLASMYM KEEMIKGERQ LGTHEDRLKD EVIKDGDKIS DGNFFKSLQN ISSTKEEVCS  120
PGPIERSCMD SSLLNMKAQN KGQDDKLEST RAEMGEVREE NERLKTLLSR ISHDYRSLQT  180
HFYDVLQQGR AKKLPDSPAT DIEEPEFVSL RLGTSTSKCK KEDKSTTSSE VKGSTEDFLK  240
IKGGLSLGLS DCRVDANNSE KVQPDVMTLS PEGSFEDARD DTAETTEQWP PSKMLKNLRS  300
VGAEAEDDIA PQPQVKKARV SVRARCDAPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA  360
AGCPVRKQVQ RCADDMSILI TTYEGTHNHP LSVSATAMAS TTSAAASMLI SGSSSTSLAA  420
YPAAAASPAL AFDASSKPPL IGGRPFFLPT AAAAAITSTP SYPTITLDLT SPAAAATSSH  480
AAFSLSNRFS HTRYPSTGFT FSGSGPSSAP WPGYLSYGAS LSAHPTSGRG QRGGGGGGGS  540
APPLYQMQQK AAAAPPPPPS VITDTIAKAI TADPSFHTAL AAAITSYVGK KGSPPASGGE  600
DSKVGLKWGE HLGLGLTHSS PSTAAAAAAS SSSQMFLQPS LGLSGSTTSA STSPVANREQ  660
AH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-203313911776Probable WRKY transcription factor 4
2lex_A7e-203313911776Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13844DKNLRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643468.10.0probable WRKY transcription factor 72 isoform X1
TrEMBLA0A0E0PTH50.0A0A0E0PTH5_ORYRU; Uncharacterized protein
STRINGORUFI06G03050.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.19e-65WRKY DNA-binding protein 72