PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI06G02550.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 256aa MW: 27016.7 Da PI: 9.0308

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI06G02550.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1e-19	93	147	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee+F+ +++++ +++ LAk+l+L rqV vWFqNrRa+ k ORUFI06G02550.1 93 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTK 147 788899***********************************************98 PP
2	HD-ZIP_I/II	125.2	3e-40	93	183	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+++n+rL+ke +eLr +lk ORUFI06G02550.1 93 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR-ALK 183 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-18	74	147	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-19	78	150	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	89	149	IPR001356	Homeobox domain
SMART	SM00389	2.8E-17	91	153	IPR001356	Homeobox domain
CDD	cd00086	4.22E-16	93	150	No hit	No description
Pfam	PF00046	6.8E-17	93	147	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	124	147	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.0E-11	149	183	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.3E-19	149	192	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MERQGLDLGL SLGLGLTTAA TWPAAGFCLN SGMAEQEVIR RDDVVAATAA EDERFACSPG 60 SPVSSGSGKR GSGSGSGDEV DDAGCDVGGG GARKKLRLSK DQAAVLEECF KTHHTLTPKQ 120 KVALAKSLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEHLKR WCDQLADDNR RLHKELAELR 180 ALKATPTPPA AAPPLTTLTM CLSCKRVANA GVPSPAAAIF PGHPQFLCGF RDHAGAASSS 240 YGGASSGLAK AVRAAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059116	0.0	AK059116.1 Oryza sativa Japonica Group cDNA clone:001-022-E09, full insert sequence.
GenBank	EU847516	0.0	EU847516.1 Oryza sativa Japonica Group clone OsHD2B homeobox leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642539.1	0.0	homeobox-leucine zipper protein HOX28
Swissprot	A2Y931	0.0	HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
Swissprot	Q5VPE5	0.0	HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBL	A0A0E0PTA4	0.0	A0A0E0PTA4_ORYRU; Uncharacterized protein
TrEMBL	B7E3F1	0.0	B7E3F1_ORYSJ; Homeobox leucine zipper protein
STRING	ORUFI06G02550.1	0.0	(Oryza rufipogon)
STRING	OS06T0140400-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3842	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-45	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]