PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G01590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 617aa MW: 65846.8 Da PI: 6.4339 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 396.2 | 3.5e-121 | 217 | 594 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPi 90 lv++L++cA+ +s+g++e+a+ +Larl e+asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++ ++ ++al++++ ++Pi ORUFI06G01590.1 217 LVRALTACADSLSAGNHEAANYYLARLGEMASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDIGPPRELTDDAfggGDDDAMALRILNAITPI 310 6899*******************************************************************9989999**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ++f h+t N+ +l+++eg+ervH+iDfdi+qGlQWp Llq+La+R+ +p+++RiTgvg+ s++el+etg rLa++A++lg+ fef++ v++ ORUFI06G01590.1 311 PRFLHFTLNERLLREFEGHERVHVIDFDIKQGLQWPGLLQSLAARAVPPAHVRITGVGE----SRQELQETGARLARVAAALGLAFEFHA-VVD 399 ***********************************************************....9**************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.eaklp 276 rled++l++L+vk+gE++aVn+vl++hrll+++++l++ +L l +s+ ++++ + e+e ns+++ +rf++al+yy+a fd++ +a+lp ORUFI06G01590.1 400 RLEDVRLWMLHVKRGECVAVNCVLAMHRLLRDDAALTD----FLGLARSTGATILLLGEHEGGGlNSGRWEARFARALRYYAAAFDAVdAAGLP 489 **********************************9999....*******************8777***********************9999** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgW 362 ++s +r+k E++ ++rei+n+va eg er+erhe+++ Wr+r+e+ GFk++ ++e++a+q +++ r+++ d y+v+ + ++l+l W ORUFI06G01590.1 490 EASPARAKAEEM-FAREIRNAVAFEGPERFERHESFAGWRRRMEDgGGFKNAGIGEREAMQGRMIARMFGPDKYTVQAHggggsggGEALTLRW 582 ************.*******************************9679**********************888****88888888677788*** PP GRAS 363 kdrpLvsvSaWr 374 d+pL++v+aW+ ORUFI06G01590.1 583 LDQPLYTVTAWT 594 ***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.179 | 191 | 567 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-118 | 217 | 594 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MLAGCSFSSS RHQMSTAQRF DILPCGFSKR GSRGDGAAPR VAGDARSGAT TCSFRTHPAP 60 PVTQSVSWGA KPEPGGNGNG AHRAVKRAHD EDAVEEYGPI VRAKRTRMGG DGDEVWFHQS 120 IAGTMQATAA GEGEEAEEEK VFLVPSAAAF PHGMAAAGPS LAAAKKEEYS KSPSDSSSSS 180 GTDGGSSAMM PPPQPPEFDA RNGVPAPGQA EREALELVRA LTACADSLSA GNHEAANYYL 240 ARLGEMASPA GPTPMHRVAA YFTEALALRV VRMWPHMFDI GPPRELTDDA FGGGDDDAMA 300 LRILNAITPI PRFLHFTLNE RLLREFEGHE RVHVIDFDIK QGLQWPGLLQ SLAARAVPPA 360 HVRITGVGES RQELQETGAR LARVAAALGL AFEFHAVVDR LEDVRLWMLH VKRGECVAVN 420 CVLAMHRLLR DDAALTDFLG LARSTGATIL LLGEHEGGGL NSGRWEARFA RALRYYAAAF 480 DAVDAAGLPE ASPARAKAEE MFAREIRNAV AFEGPERFER HESFAGWRRR MEDGGGFKNA 540 GIGEREAMQG RMIARMFGPD KYTVQAHGGG GSGGGEALTL RWLDQPLYTV TAWTPAGDGA 600 GGSTVSASTT ASHSQQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-59 | 224 | 595 | 26 | 380 | Protein SCARECROW |
5b3h_A | 4e-59 | 224 | 595 | 25 | 379 | Protein SCARECROW |
5b3h_D | 4e-59 | 224 | 595 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP001168 | 0.0 | AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02. | |||
GenBank | AP002838 | 0.0 | AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881992.1 | 0.0 | protein DWARF AND LOW-TILLERING-like | ||||
Swissprot | Q9LWU9 | 0.0 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A0E0PSX0 | 0.0 | A0A0E0PSX0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G01590.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS06T0127800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-115 | GRAS family protein |
Publications ? help Back to Top | |||
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