PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G00570.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 519aa MW: 56786.5 Da PI: 7.5002 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.6 | 1e-08 | 303 | 340 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LA+++gL+ +qV++WF N R + ORUFI06G00570.2 303 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 340 554459******************************88 PP | |||||||
2 | BELL | 60.7 | 3.4e-20 | 179 | 227 | 24 | 72 |
BELL 24 kqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ve++++v sFeavag g+a++Yt+lA++a+SrhFrcL+da+++q+ ORUFI06G00570.2 179 LSMVEEMRAVEVSFEAVAGGGAAQVYTKLAMRAMSRHFRCLRDALVGQV 227 55789*****************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.0E-55 | 101 | 225 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-25 | 107 | 223 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.564 | 281 | 344 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.09E-12 | 284 | 345 | No hit | No description |
SMART | SM00389 | 6.5E-9 | 284 | 348 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-17 | 285 | 351 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-27 | 287 | 350 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.4E-17 | 301 | 340 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MMAAHHHHHE HHHLLDMSSP PNASGAIISS FDHAAGLLSL HDVAAAADHH HHHLRGGGGG 60 LQLPSPWSQQ QVSLSLYNNA AGAAGSPPSS LVAHQQLAAA QPLMFQLRGS KYLGPVKALL 120 AEFCSLDVEA MDGAKQQRPP NPNPKIGKWD DVEGSGSWGN LSLSSMDLLD LERRKARILS 180 MVEEMRAVEV SFEAVAGGGA AQVYTKLAMR AMSRHFRCLR DALVGQVRAL RNAMGESQRD 240 AAGGVAAAAP GATKGDTPRL RVLDQCLRQQ RAFQQSGAVD SFPWRPQRGL PERAVAVLRA 300 WLFEHFLHPY PNDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMIEDMY KEETKPESSD 360 GNNKLNPSAA GNKQQHRDDP KKNYTATTAE ASLVQQSSYH LHLRSSGNRN SSSLMIPAAA 420 STSIDHHHDS SHQLLGGHSY SSAAGLHHGH GGAVSLTLGL QQQQQPFAAS MMHQHQQHQH 480 QHQQQQSFMV EAAEEEEDDV LPYRNLMESQ LLHDFAGAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-15 | 290 | 347 | 5 | 62 | Homeobox protein Meis2 |
3k2a_B | 4e-15 | 290 | 347 | 5 | 62 | Homeobox protein Meis2 |
4xrs_A | 4e-15 | 290 | 347 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 4e-15 | 290 | 347 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB218895 | 0.0 | AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641004.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | A0A0E0PSI1 | 0.0 | A0A0E0PSI1_ORYRU; Uncharacterized protein | ||||
STRING | ONIVA06G00550.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 6e-84 | TALE family protein |