PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G00570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 521aa MW: 57027.8 Da PI: 7.6407 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.6 | 1.1e-08 | 305 | 342 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++ LA+++gL+ +qV++WF N R + ORUFI06G00570.1 305 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 342 554459******************************88 PP | |||||||
2 | BELL | 60.4 | 4.1e-20 | 170 | 229 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +l+++ka++ls++ee++ +++v sFeavag g+a++Yt+lA++a+SrhFrcL+da+++q+ ORUFI06G00570.1 170 DLERRKARILSMVEEIK---------MRAVEVSFEAVAGGGAAQVYTKLAMRAMSRHFRCLRDALVGQV 229 68899999999999996.........89**************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.6E-56 | 101 | 227 | IPR006563 | POX domain |
Pfam | PF07526 | 7.1E-27 | 107 | 225 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.564 | 283 | 346 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.28E-12 | 286 | 347 | No hit | No description |
SMART | SM00389 | 6.5E-9 | 286 | 350 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-17 | 287 | 353 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-27 | 289 | 352 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.5E-17 | 303 | 342 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MMAAHHHHHE HHHLLDMSSP PNASGAIISS FDHAAGLLSL HDVAAAADHH HHHLRGGGGG 60 LQLPSPWSQQ QVSLSLYNNA AGAAGSPPSS LVAHQQLAAA QPLMFQLRGS KYLGPVKALL 120 AEFCSLDVEA MDGAKQQRPP NPNPKIGKWD DVEGSGSWGN LSLSSMDLLD LERRKARILS 180 MVEEIKMRAV EVSFEAVAGG GAAQVYTKLA MRAMSRHFRC LRDALVGQVR ALRNAMGESQ 240 RDAAGGVAAA APGATKGDTP RLRVLDQCLR QQRAFQQSGA VDSFPWRPQR GLPERAVAVL 300 RAWLFEHFLH PYPNDVDKHI LARQTGLSRS QVSNWFINAR VRLWKPMIED MYKEETKPES 360 SDGNNKLNPS AAGNKQQHRD DPKKNYTATT AEASLVQQSS YHLHLRSSGN RNSSSLMIPA 420 AASTSIDHHH DSSHQLLGGH SYSSAAGLHH GHGGAVSLTL GLQQQQQPFA ASMMHQHQQH 480 QHQHQQQQSF MVEAAEEEED DVLPYRNLME SQLLHDFAGA S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-15 | 292 | 349 | 5 | 62 | Homeobox protein Meis2 |
3k2a_B | 4e-15 | 292 | 349 | 5 | 62 | Homeobox protein Meis2 |
4xrs_A | 4e-15 | 292 | 349 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 4e-15 | 292 | 349 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB218895 | 0.0 | AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641004.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | A0A0E0PSI0 | 0.0 | A0A0E0PSI0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G00570.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6398 | 35 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 3e-85 | TALE family protein |