PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G00530.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 199aa    MW: 21627.6 Da    PI: 9.8329
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G00530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.81.3e-2537138197
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+kv tpsdv+k++rlv+pk++ae++         ++ ++ l +ed +g   +W+++++y+ +s++yv+tkGW+++v++++L +gD+v F    
  ORUFI06G00530.1  37 FEKVVTPSDVGKLNRLVVPKHYAEKYfplgpaARTSPAGTVLCFEDARGgdSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSFC--- 127
                      99***************************999445557789*****99999***************************************9... PP

                      SSEE..EEEEE CS
               B3  87 rsefelvvkvf 97 
                      r +++l++  +
  ORUFI06G00530.1 128 RAGARLFIDCR 138
                      44555666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-3431150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2633133IPR015300DNA-binding pseudobarrel domain
CDDcd100179.36E-1936126No hitNo description
PfamPF023627.7E-2337139IPR003340B3 DNA binding domain
SMARTSM010191.3E-1837141IPR003340B3 DNA binding domain
PROSITE profilePS5086312.05537141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MATIVAWESR NLQLQGGGGG HVGGGGGGGG ERREYMFEKV VTPSDVGKLN RLVVPKHYAE  60
KYFPLGPAAR TSPAGTVLCF EDARGGDSTW RFRYSYWSSS QSYVITKGWS RYVRDKRLAA  120
GDTVSFCRAG ARLFIDCRKR AASVSSSSLV PPALIKVQLP PSRPVVDEEE AACGRRCLRL  180
FGVDLQLRAD ASPALDLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-42331404113B3 domain-containing transcription factor NGA1
5os9_B3e-42331404113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0006160.0AP000616.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0514G12.
GenBankAP0011290.0AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankKC0191720.0KC019172.1 Oryza sativa Indica Group cultivar TN1 insect-resistance protein (BPH29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642534.11e-143B3 domain-containing protein Os06g0107800
SwissprotQ5VS551e-144Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A0E0PSH51e-143A0A0E0PSH5_ORYRU; Uncharacterized protein
STRINGORUFI06G00530.11e-143(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-42B3 family protein