PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G00370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9981.28 Da PI: 7.6836 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 7e-09 | 40 | 74 | 1 | 37 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 r +WT E++++++a +++ + Wk+I +++g +t ORUFI06G00370.1 40 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTV 74 789*****************77.*********.8885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-10 | 28 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-10 | 38 | 75 | IPR006447 | Myb domain, plants |
PROSITE profile | PS51293 | 9.717 | 38 | 88 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 39 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-4 | 39 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-7 | 40 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-4 | 42 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MSSAPQQLLD SSSPGPGPGP EVEDDGGRRV RKPYTITKSR ESWTDPEHDK FLEALQLFDR 60 DWKKIEAYVG SKTVIQPLKL SYHNKLLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111672 | 1e-124 | AK111672.1 Oryza sativa Japonica Group cDNA clone:J013156D15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642931.1 | 1e-48 | protein REVEILLE 6 | ||||
Swissprot | Q8H0W3 | 8e-27 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0E0A3X6 | 6e-58 | A0A0E0A3X6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0HJP0 | 6e-58 | A0A0E0HJP0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PSF8 | 6e-58 | A0A0E0PSF8_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM06G00320.1 | 9e-59 | (Oryza glumipatula) | ||||
STRING | ORUFI06G00370.1 | 9e-59 | (Oryza rufipogon) | ||||
STRING | ONIVA06G00390.1 | 9e-59 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17335 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 4e-29 | MYB_related family protein |
Publications ? help Back to Top | |||
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