PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G28740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 343aa MW: 37169.1 Da PI: 8.4178 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48.4 | 1.5e-15 | 269 | 294 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg ORUFI05G28740.1 269 FKTELCNKWEETGACPYGDQCQFAHG 294 79***********************9 PP | |||||||
2 | zf-CCCH | 23.7 | 8.6e-08 | 307 | 332 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt Cr +++G C+yG rC+F H+ ORUFI05G28740.1 307 YKTQVCRMVLAGGVCPYGHRCHFRHS 332 9**********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-19 | 263 | 301 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-10 | 265 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 268 | 296 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-10 | 268 | 295 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-12 | 269 | 294 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-12 | 302 | 332 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.15E-8 | 302 | 334 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.9E-5 | 306 | 333 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.685 | 306 | 334 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-5 | 307 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MQEALLPPAH PGRFYSDFGP KPFGSGDQRL SSPNLLTNGG DLFYGCYSPF SPTRVLSPPP 60 PRRAASFSHC SSSSDSVVDD GDGAGAAAAT EHRLHLAHLA LQYQEMANRF ELCLSHLADA 120 ADEAAALRQE NAELRVANND LACRIAKFGG RQSSAIALAG DLRRLRLPKE QTVPALPPPP 180 QSPPAALMNP VAVPEKQAVL PKSISIRSTG YQKLNQGGKH RVSKPVNVGS QRVFVGIDGA 240 EGGEHKVGVK KEEPPMGGLE FEVYNQGMFK TELCNKWEET GACPYGDQCQ FAHGVAELRP 300 VIRHPRYKTQ VCRMVLAGGV CPYGHRCHFR HSITPADRFS FGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-22 | 269 | 332 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106354 | 0.0 | AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640820.1 | 0.0 | zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q6L5G1 | 0.0 | C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A0E0HIW0 | 0.0 | A0A0E0HIW0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PRL8 | 0.0 | A0A0E0PRL8_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8AX89 | 0.0 | B8AX89_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI05G28740.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS05T0576300-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA05G28820.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-58 | C3H family protein |
Publications ? help Back to Top | |||
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