PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G28440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 274aa MW: 29677.4 Da PI: 10.2549 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 98 | 148 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p + r r++lg+++++e Aa a+++a+ kl+ge ORUFI05G28440.1 98 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAFKLRGE 148 59****999.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.65E-29 | 97 | 155 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-30 | 98 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 98 | 155 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.169 | 98 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 98 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-12 | 99 | 110 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-13 | 99 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-12 | 137 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MDASLRTLPP AIFPGEVRSA VSSLLLSPGG SAPPAPVFPP PPPPVPTPPL GSSVYYRQSE 60 LLRHFAASQA AQAQSATAAA SSSSAAAAGL DDGAPRKLYR GVRQRQWGKW VAEIRLPQNR 120 VRVWLGTYDS PETAAHAYDR AAFKLRGEYA RLNFPGVMDG RDCPDNLRQL RDAVDAKIQA 180 IRVRMARKRA RARRQREESK KSQRAEDAKA ATPSRPVASE RAASETTTTT TTTSSSYGSP 240 DGVLSMSAAS VDGDCPLERM PSFDPELIWE MLNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 94 | 155 | 1 | 63 | ATERF1 |
3gcc_A | 2e-18 | 94 | 155 | 1 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 191 | ARKRARA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104284 | 0.0 | AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT841687 | 0.0 | CT841687.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102K07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638431.1 | 1e-143 | ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A0E0PRI1 | 0.0 | A0A0E0PRI1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G28440.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8828 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 2e-32 | ERF family protein |