PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G27630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 1855aa MW: 206401 Da PI: 5.1252 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 4.9e-19 | 59 | 113 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ + +++yp++++r+eL+ klgLt+rq ++WF+ rR k++k ORUFI05G27630.1 59 KRVMKTPYQLEVLERTYTEDPYPNETMRAELSVKLGLTDRQLQMWFCHRRLKDRK 113 8999*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.57E-17 | 41 | 113 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 51 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 54 | 114 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-17 | 56 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.92E-14 | 57 | 114 | No hit | No description |
Pfam | PF00046 | 9.7E-17 | 59 | 113 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 15.766 | 618 | 677 | IPR018501 | DDT domain |
SMART | SM00571 | 2.2E-18 | 618 | 677 | IPR018501 | DDT domain |
Pfam | PF02791 | 7.1E-16 | 620 | 674 | IPR018501 | DDT domain |
Pfam | PF05066 | 2.9E-15 | 796 | 863 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 6.8E-10 | 1018 | 1060 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 8.0E-13 | 1197 | 1268 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1855 aa Download sequence Send to blast |
MDSSGDGGDE GAGAAPAGVE EESPAPASAP APAPASASAP VPAAVGGGAG ASGSSGKVKR 60 VMKTPYQLEV LERTYTEDPY PNETMRAELS VKLGLTDRQL QMWFCHRRLK DRKPPPKRQQ 120 LEEEVPVPVM APPPVLPPPL PHSELTMGTG GMYGEPLLSP SSRRGTGRPS AVPRISASEV 180 ARRYYEPPQV MLPPLAPMQL TRAEHRVIDS VERLIGEPLR EDGPVLGVEF DPLPPGAFGA 240 PIVPEQQRQP FRSYEAKMFS GHDTKHIKAS AFLPSIDPFV PSTVSGKRKS MTGSSSHLGS 300 RAVREYQFIP EQSSDIYERT TQSRYYDVLT EASDSRMSTG SRFLHGVEKA PGYTFHGQIS 360 GSSHLSLHGR PPVFSSGSTD YEMDPSNINS SSVPNESQYG IPQVAGFENS VAPSDRMVYH 420 DDDAFRMERK RKHSEEVKIA KEVEAHEKRI RKELEKQDML NRKREEQVRR EMERNDRERR 480 KEEERLLREK QKEEERFQRE QRREHKRMEK YLLKQSLRAE KIRQKEELRK EKEAARQKAA 540 NERATARRIA REYMELMEDE RLELMELVSR SKGLPSMLSL DSDTLQQLDS FRGMLRQFPS 600 EIVRLKVPFS IKPWTSSEDN IGNLLMVWKF FITFADVLGI PSFTLDEFVQ SLHDYDSRLL 660 GELHVALLKS IIKDIEDVAR TPSVASGMTA NPGGGHPQIV EGAYDWGFNI LAWQRHLNLL 720 TWPEILRQFG LSAGLGPQLR KRNAENVNNH DDNEGRNGED VISILRSGSA AVNAAAKMKE 780 RGYGNRRRSR HRLTPGTVKF AAFHVLSLEG SQGLTILEVA EKIQKSGLRD LTTSKTPEAS 840 ISAALSRDSK LFERTAPSTY CVKTPYRKDP ADSEAVLAAA REKIRVFQNT ISECEEVEKD 900 VDDAERDEDS ECDDADDDPD GDEVNIEEKD VKTSLVKAQD GGMPTAVGDI KKETNSIVNS 960 LTTPLIHTKS SESSSLRTLD KSVQVRTTSD LPAEISSDNH EGASDSAQDA EIDESNQGES 1020 WVQGLAEGDY CDLSVEERLN ALVALIGVAT EGNSIRAVLE ERLEAASALK KQMWAEAQLD 1080 KRRSREEFSS KMQYDSGMGL KTDVDQQNTL AESNLTPVHN LVKDSNGNGS LVNNELPVDQ 1140 QSQPNACSVV HERNGVRQEF SANPENLSGQ QYVTSEKTRS QLKSYIGHKA EQLHVYRSLP 1200 LGQDRRRNRY WQFSTSASPD DPGSGRIFFE SRDGYWRLID SIETFDALVS SLDTRGIRES 1260 HLHSMLQSIE PTFKEAIGRK RCASIEPSAG RVLKNGTSEI ISPNHSNEFG SPCSTLSGVA 1320 TDSAMAYSDS FRIELGRNDV EKTAISERAD LFIKWMWKEC NNHQPTCAMK HGKKRCSELI 1380 QCCDFCYQIY LAEETHCASC HKTFKSIHNI SEHSSQCEEK RRTDPNWKMQ ISDYSVPVGL 1440 RLLKLLLATV EASVPAEALE PFWTDVYRKS WGVKLYSTSS TKEVFEMLTI LEGAIRRDFL 1500 SSDFETTTEL LNLSTQDSAS RNTVPRSGSA DVLPWVPDTV AAVVLRLLDL DSAISYTLRQ 1560 KVGSNKERGA GEFMKLPPRY TPAKTKQETE PMGTGFDRQE TWLTPSNGRG GRGGRGRGSR 1620 GGSRGGRSRS RGGKVPRGIS SSPKIEFRGY SASAVSSEKA PRKYARRGRN RGRGRGLRTV 1680 RPRQPSDIGA RSIPKPNLLG SFSMLRNAKH TTAMESPQSS GAEEWGLERR PSYVKDDEDN 1740 SASQSEESSE ENSEPMNEEY DELLPDYSRD NSGSSPLQMM DDGSDDNEED AEGDEDGEED 1800 GEDYDAEQHV DEDNDDAEMG EDDVEDNDDG DGGGGGAENG DEDEDGTSYS SEYSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121237 | 0.0 | AK121237.1 Oryza sativa Japonica Group cDNA clone:J023095K21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639400.1 | 0.0 | homeobox-DDT domain protein RLT2 isoform X1 | ||||
TrEMBL | A0A0E0PR79 | 0.0 | A0A0E0PR79_ORYRU; Uncharacterized protein | ||||
TrEMBL | B9FI45 | 0.0 | B9FI45_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI05G27630.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2283 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |