PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G26590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 238aa MW: 24640 Da PI: 10.1874 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.6 | 7.2e-21 | 88 | 150 | 30 | 92 |
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 +++++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL +gD v F++ ++++l ORUFI05G26590.1 88 HQRGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNAQL 150 3477899***********************************************765555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0017 | 69 | 157 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.7E-18 | 87 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-24 | 87 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.8E-18 | 89 | 152 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.18 | 94 | 158 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.97E-16 | 96 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDSTSCLLDD ASSGASTGKK AAAAAASKAL QRVGSGASAV MDAAEPGAEA DSGGERRGGG 60 GGKLPSSKYK GVVPQPNGRW GAQIYERHQR GVLLNFEDAA GKVWKFRYSY WNSSQSYVLT 120 KGWSRFVKEK GLHAGDAVGF YRAAGKNAQL FIDCKVRAKP TTAAAAAAFL SAVAAAAAPP 180 PAVKAIRLFG VDLLTAAAPE LQDAGGAAMT KSKRAMDAMA ESQAHVVFKK QCIELALT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-30 | 90 | 158 | 50 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC130725 | 0.0 | AC130725.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0494H05, complete sequence. | |||
GenBank | AC135925 | 0.0 | AC135925.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0560C03, complete sequence. | |||
GenBank | AC136492 | 0.0 | AC136492.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0554F08, complete sequence. | |||
GenBank | AK243363 | 0.0 | AK243363.1 Oryza sativa Japonica Group cDNA, clone: J100061M08, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655554.1 | 2e-81 | PREDICTED: AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
Swissprot | Q6L4H4 | 9e-79 | Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
TrEMBL | A0A0E0PQU1 | 1e-170 | A0A0E0PQU1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G26590.1 | 1e-171 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP29063 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 9e-33 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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