PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI05G25940.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 414aa MW: 42231.8 Da PI: 6.4012

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI05G25940.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.3e-06	310	350	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L ORUFI05G25940.1 310 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 350 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.259	301	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-12	307	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.14E-10	307	355	No hit	No description
SMART	SM00353	2.2E-11	307	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-9	310	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGNGA AGAVRSDDAY 60 GLDVDLPSHQ MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDVGLLD 120 RFAFPNVAET TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT 180 ALPPSKRKLP EKYPVVGTSP TTKTTTTSET AAERRSTKRG AGGSSSITFG GGCHGAGAAA 240 ALLGLGRGYE PDTEAIAQVK EMIYRAAAMR PVTLGGAASA SDPSSAAPPP PQRPRRKNVR 300 ISSDPQTVAA RLRRERVSER LRVLQRLVPG GSKMDTATML DEAASYLKFL KSQLEALETL 360 GNGNGNGNLL HHGYYTGSRN ATATAATGSS NSTVLAFGRD GLAGFVKSNR NLQL

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGNGA AGAVRSDDAY  60
GLDVDLPSHQ MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDVGLLD  120
RFAFPNVAET TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT  180
ALPPSKRKLP EKYPVVGTSP TTKTTTTSET AAERRSTKRG AGGSSSITFG GGCHGAGAAA  240
ALLGLGRGYE PDTEAIAQVK EMIYRAAAMR PVTLGGAASA SDPSSAAPPP PQRPRRKNVR  300
ISSDPQTVAA RLRRERVSER LRVLQRLVPG GSKMDTATML DEAASYLKFL KSQLEALETL  360
GNGNGNGNLL HHGYYTGSRN ATATAATGSS NSTVLAFGRD GLAGFVKSNR NLQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	296	RPRRK
2	310	315	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638480.1	0.0	transcription factor LATE FLOWERING
Swissprot	A0A0P0WQ90	0.0	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A0E0PQK6	0.0	A0A0E0PQK6_ORYRU; Uncharacterized protein
STRING	ORUFI05G25940.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-27	bHLH family protein

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]