PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI05G24800.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 255aa MW: 28257.9 Da PI: 5.2517

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI05G24800.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.4e-08	101	126	3	26
S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG...tCkyGdrCkFaHg 26 e+C++f+r C++G++C+FaHg ORUFI05G24800.1 101 GEPCPDFRR-RpgaACPRGSTCPFAHG 126 689**99.558***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.324	98	128	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.041	98	127	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.3E-6	99	130	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-5	102	126	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	28	136	159	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MASREHLLLD PAALAVSWAD PAAVEIPPEL LAALGEYLSA RRSDGEAEAD AEAEADDEFM 60 MYEFKVRRCA RARSHDWTAC PYAHPGEAAR RRDPRRVAYT GEPCPDFRRR PGAACPRGST 120 CPFAHGTFEL WLHPSRYRTR PCRAGVACRR RVCFFAHTAG ELRAGSKEDS PLSLSPKSTL 180 ASLWESPPVS PVEGRRWVDG IDECDADAEM EELMFAMREL GLRKVRPSAS SVTPVLPPVT 240 DEDGPDFGWV SELVM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC109596	0.0	AC109596.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1593_C11, complete sequence.
GenBank	AK108249	0.0	AK108249.1 Oryza sativa Japonica Group cDNA clone:002-140-H10, full insert sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBank	EU847521	0.0	EU847521.1 Oryza sativa Japonica Group clone OsLS333 zinc finger protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637897.1	0.0	zinc finger CCCH domain-containing protein 37
Swissprot	Q65X92	0.0	C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37
TrEMBL	A0A0E0PQ67	0.0	A0A0E0PQ67_ORYRU; Uncharacterized protein
TrEMBL	A2Y6P7	0.0	A2Y6P7_ORYSI; Uncharacterized protein
TrEMBL	B7F147	0.0	B7F147_ORYSJ; Zinc finger protein
TrEMBL	I1PXG1	0.0	I1PXG1_ORYGL; Uncharacterized protein
STRING	ORUFI05G24800.1	0.0	(Oryza rufipogon)
STRING	OS05T0525900-01	0.0	(Oryza sativa)
STRING	ORGLA05G0205900.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11209	19	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	1e-40	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]