PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G24130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 494aa MW: 54029.8 Da PI: 6.45 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.9 | 1.6e-26 | 20 | 157 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atg 87 +GfrF+P++ e v +yL ++++g++ + +i ++y++eP++L + ++e+ wyf s+rd+ky++gkr++r+t+ +g+Wk +tg ORUFI05G24130.1 20 MGFRFKPREAEAVEYYLLPRLQGRPPVPNPAIVVENVYEFEPERLInEkcnggVGGEGEEGWYFLSPRDRKYRNGKRPSRSTEdkAGRWKaSTG 113 7************************7666779999**********733455532233777********************887679****5466 PP NAM 88 k...dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k + ++++ g ++ + ++Lv++kg ++ +kt+W+m e+++ ORUFI05G24130.1 114 KtegKDPITECYGWVKFCVTSLVYFKGPVKTEKKTKWLMREFTI 157 64435678777888999**********99999**********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.028 | 18 | 190 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-29 | 19 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-15 | 20 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MAGLGKGESS GGGGGGGGEM GFRFKPREAE AVEYYLLPRL QGRPPVPNPA IVVENVYEFE 60 PERLINEKCN GGVGGEGEEG WYFLSPRDRK YRNGKRPSRS TEDKAGRWKA STGKTEGKDP 120 ITECYGWVKF CVTSLVYFKG PVKTEKKTKW LMREFTIPHF ENKLDKTAAA GGSSNQRQLD 180 QYVLCRIYTS PKKGADDGEQ AEVVRGGGGG GEDIDEWAEA CAVFDLGPET AEGSDNADAA 240 AAEGDMRSAK QAGKRPVAAA AVAEQPSKRP WLPPSPSTPC DGGPSQAMGN RQVPMQGLSL 300 MHNFPPPPTT FCGHAPFQQG FPVHNNRAQM RWPTMQHNCM PSPAHSFQPR PVQRRPVLVG 360 QAPPQRRPVH QVGGHAPMHM HQAQWTPVHI AQAPMQQLPF DDWVFDPFDD PPPPMQQLPV 420 MMNNYQPQAP MQLPPMMNND QPAMVHGGEL QAPMQLLPAT THGGEVQAPM PLNVYEEEQR 480 PSQEDGGQCT NAEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-16 | 21 | 188 | 20 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-16 | 21 | 188 | 20 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-16 | 21 | 188 | 20 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-16 | 21 | 188 | 20 | 163 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-16 | 21 | 188 | 20 | 163 | NAC domain-containing protein 19 |
4dul_B | 4e-16 | 21 | 188 | 20 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC130603 | 0.0 | AC130603.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1130G10, complete sequence. | |||
GenBank | AC132485 | 0.0 | AC132485.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0022D06, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881431.1 | 1e-179 | pollen-specific leucine-rich repeat extensin-like protein 1 | ||||
TrEMBL | A0A0E0PPY6 | 0.0 | A0A0E0PPY6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G24130.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14361 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 5e-19 | NAC domain containing protein 2 |