PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI05G23910.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 342aa MW: 35317.2 Da PI: 7.4365

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI05G23910.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.1	3.4e-30	102	204	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++ +++ + +a++s ++ ORUFI05G23910.1 102 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPH----DHDLVAAAASSMAPppfanggd 191 78*************************************************************99999....2222222221111122222334 PP TCP 89 ............k 89 + ORUFI05G23910.1 192 ghhgasassmleD 204 4443333333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-26	103	165	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.959	103	161	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MACMAGVDSR GGEALSLAAV CCSTVAAAAC ATVPLNSFSF RSNHEQLKMI SNNSTNEELG 60 GGGRKAADQP SGGGGAAAAV ASSRHWSAST ESRIVRVSRV FGGKDRHSKV RTVKGLRDRR 120 VRLSVPTAIQ LYDLQDRLGL SQPSKVVDWL INAAQAEIDK LPPLQFPPHD HDLVAAAASS 180 MAPPPFANGG DGHHGASASS MLEDGDKAAG GGGMKAFMSL SNSLGLLNAA TMPATLAAHH 240 HHHHHAAAYY AAAESWGNGG NGGHHHDVSH GVSPSAHNSP FPSLLSLAPG SHHQFVFYSP 300 EGGGFAVKEA AAEQFPVDSL DHSQGQLTLS SARSFLHSGS QG

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MACMAGVDSR GGEALSLAAV CCSTVAAAAC ATVPLNSFSF RSNHEQLKMI SNNSTNEELG  60
GGGRKAADQP SGGGGAAAAV ASSRHWSAST ESRIVRVSRV FGGKDRHSKV RTVKGLRDRR  120
VRLSVPTAIQ LYDLQDRLGL SQPSKVVDWL INAAQAEIDK LPPLQFPPHD HDLVAAAASS  180
MAPPPFANGG DGHHGASASS MLEDGDKAAG GGGMKAFMSL SNSLGLLNAA TMPATLAAHH  240
HHHHHAAAYY AAAESWGNGG NGGHHHDVSH GVSPSAHNSP FPSLLSLAPG SHHQFVFYSP  300
EGGGFAVKEA AAEQFPVDSL DHSQGQLTLS SARSFLHSGS QG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-20	108	162	1	55	Putative transcription factor PCF6
5zkt_B	3e-20	108	162	1	55	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC130604	0.0	AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637968.1	0.0	transcription factor TCP13
TrEMBL	A0A0E0PPW1	0.0	A0A0E0PPW1_ORYRU; Uncharacterized protein
STRING	ORUFI05G23910.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2490	35	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	2e-40	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5