PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G23130.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 323aa    MW: 34089.6 Da    PI: 6.4491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G23130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.9e-062122491254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  ORUFI05G23130.1 212 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 249
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.744200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-12210267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.86E-6210254No hitNo description
SMARTSM003530.0061211255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-9214257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MADEHEWWNS PCSARTGDDE AACSTADADE SAVGSTPMSF GHGGQPASLS DAAASSSSSS  60
FLLAGQHMDY WTQDFMGGRA AAAATASFDT LLQLQLQGGD AASRRLLLGD HAAAPPRHLV  120
VPGAPYGGGG GDDTAAPPRG LSPTPYEAAD NLQQQQSFPG GHHVVSNTDR LHDHHQDAGS  180
PSPATRSSPG SPAAAKKPRI EAPSPMPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH  240
EAIEYIKFLH DQVASLSSPY LRCGRPVQLQ HQQGSHKVNG NCEGKQLDLR SRGLCLVPVA  300
STYTVASETA TEFWHPTFGG TFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378340.0CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638165.10.0transcription factor bHLH68 isoform X2
TrEMBLA0A0E0PPL00.0A0A0E0PPL0_ORYRU; Uncharacterized protein
TrEMBLQ60EJ40.0Q60EJ4_ORYSJ; Os05g0501200 protein
STRINGORUFI05G23130.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-49bHLH family protein