PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G22860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 703aa MW: 76560.4 Da PI: 9.7427 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.8e-06 | 180 | 200 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C f+a+ G Ck G +C+F H ORUFI05G22860.1 180 RTCTFYAQ-GRCKNGKSCTFLH 200 78******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 175 | 201 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 176 | 201 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 176 | 203 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0043 | 176 | 202 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MAGGGRGAGL PAAGEAAKAG RVGVGTTKRA RDPSPNSKDP NGVVANLLWR RYSGKVVAEV 60 KASILPYVAS TLEAKQVEKG KEEGLTGKTS RERERRKGGF VGVIAAEKKP ALQLHGDEKY 120 QKKAGNDPVP PTIDDTSKTG GLHLHGGHVS QSPPDSNALS SQRFGSSSPG GDMKNKTRKR 180 TCTFYAQGRC KNGKSCTFLH EGEVSGSDNQ VYGNHGGTGE GSEIQHPSSS KERQFKNSAG 240 SSQHEIYRTL VHAYGEDNRG LTHPVVKHSC HMLKASHGFK IGGSLTANPT NEVVQLPVVQ 300 EKNHEPYFMG HQISLGTNNC LNDMGAYSRL RLDGGKLQFE VAKGDSPRDS HLSRSYLEKN 360 PLKPDYRYQP FDSTISLDPH QYSKKLSAYG GATENLPHKH QEEKSSSHVS YSLNSYTGFR 420 KQGHDSSDFF LVNQSLRATS HHGTLPLHQL TPDKDASHHK GADFDKGGTS RSTLHVSSSS 480 QPVVASAGKL SPIKDEVWIT SVPFVPSFNF PDFPGSTSPS KSQYDPLVDS IDPPKVESLN 540 NLKTSNISCS ISSQHVDTNV IRGGSLEKPL TFADKLARNV SAKGSNDFGL ISYDRGHSSS 600 LDGDNRVKTC ERKNDASLNN EKSDFRFHLV EHVKELVKPI WKEGNLSKEA HKLIVKKSVD 660 KIFASLEPNQ MPETEKAITT YITASAPKIE KLVKAYVDRY RTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640223.1 | 0.0 | zinc finger CCCH domain-containing protein 36 | ||||
Swissprot | Q75K81 | 0.0 | C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | A0A0E0PPG4 | 0.0 | A0A0E0PPG4_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G22860.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11010 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 5e-15 | C3H family protein |
Publications ? help Back to Top | |||
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