PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G22860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 703aa    MW: 76560.4 Da    PI: 9.7427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G22860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06180200425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      + C f+a+ G Ck G +C+F H
  ORUFI05G22860.1 180 RTCTFYAQ-GRCKNGKSCTFLH 200
                      78******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-5175201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6176201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605176203IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043176202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MAGGGRGAGL PAAGEAAKAG RVGVGTTKRA RDPSPNSKDP NGVVANLLWR RYSGKVVAEV  60
KASILPYVAS TLEAKQVEKG KEEGLTGKTS RERERRKGGF VGVIAAEKKP ALQLHGDEKY  120
QKKAGNDPVP PTIDDTSKTG GLHLHGGHVS QSPPDSNALS SQRFGSSSPG GDMKNKTRKR  180
TCTFYAQGRC KNGKSCTFLH EGEVSGSDNQ VYGNHGGTGE GSEIQHPSSS KERQFKNSAG  240
SSQHEIYRTL VHAYGEDNRG LTHPVVKHSC HMLKASHGFK IGGSLTANPT NEVVQLPVVQ  300
EKNHEPYFMG HQISLGTNNC LNDMGAYSRL RLDGGKLQFE VAKGDSPRDS HLSRSYLEKN  360
PLKPDYRYQP FDSTISLDPH QYSKKLSAYG GATENLPHKH QEEKSSSHVS YSLNSYTGFR  420
KQGHDSSDFF LVNQSLRATS HHGTLPLHQL TPDKDASHHK GADFDKGGTS RSTLHVSSSS  480
QPVVASAGKL SPIKDEVWIT SVPFVPSFNF PDFPGSTSPS KSQYDPLVDS IDPPKVESLN  540
NLKTSNISCS ISSQHVDTNV IRGGSLEKPL TFADKLARNV SAKGSNDFGL ISYDRGHSSS  600
LDGDNRVKTC ERKNDASLNN EKSDFRFHLV EHVKELVKPI WKEGNLSKEA HKLIVKKSVD  660
KIFASLEPNQ MPETEKAITT YITASAPKIE KLVKAYVDRY RTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640223.10.0zinc finger CCCH domain-containing protein 36
SwissprotQ75K810.0C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0E0PPG40.0A0A0E0PPG4_ORYRU; Uncharacterized protein
STRINGORUFI05G22860.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-15C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]