PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G22440.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 411aa    MW: 46102.4 Da    PI: 10.4852
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G22440.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like911e-28193253155
          G2-like   1 kprlrWtpeLHerFveaveqLGGse......kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rlrWt++LH+rFv+a++qLGG++      +AtPk +l +m+v+g+t++hvkSHLQkYRl
  ORUFI05G22440.2 193 KQRLRWTSDLHNRFVDAIAQLGGPDsgyslsRATPKGVLTVMGVPGITIYHVKSHLQKYRL 253
                      79*********************975555558****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-28191254IPR009057Homeodomain-like
SuperFamilySSF466891.97E-14192253IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-21193254IPR006447Myb domain, plants
PfamPF002492.0E-6195252IPR001005SANT/Myb domain
PfamPF143794.6E-24285331IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGPTPWTRPT VHSSFPLPSR RRENPNQHNE TTRKRECEAK RAKKEREKKN PPKSQGLPLL  60
SLSLSPPRAS LSPDTTAPRR FPLLSSPRVA SFLPFLTPPI PNWESPLGRR RKRKQQRRAS  120
GSPALPAFWW WWRRPAADRC LAVPVSILMM YHAKKFSVPF GPQSTQSNEH MSNIGAFGGS  180
NMGSPANPAG SGKQRLRWTS DLHNRFVDAI AQLGGPDSGY SLSRATPKGV LTVMGVPGIT  240
IYHVKSHLQK YRLAKYIPES PAEGSKDEKK DSSDSLSNTD SAPGMQINEA LKMQMEVQKR  300
LHEQLEVQRQ LQLRIEAQGK YLQMIIEEQQ KLGGSLKACE EQKLPHSPPS LDDYPDSMQP  360
SPKKPKMDNL SPDSVRDVTQ SDFESHLIGP WDQEAAFRVD EFKADPGLNK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-18192256159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-18192256159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-18192256159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-18192256159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-18192256159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-18192256159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-18192256159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-18192256159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107114GRRRKRKQ
2107115GRRRKRKQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0619870.0AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence.
GenBankAK0693060.0AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence.
GenBankCT8300690.0CT830069.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051M08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639152.10.0myb family transcription factor PHL7
RefseqXP_015639153.10.0myb family transcription factor PHL7
RefseqXP_015639154.10.0myb family transcription factor PHL7
RefseqXP_015639155.10.0myb family transcription factor PHL7
SwissprotQ9SJW01e-70PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0E0PPB80.0A0A0E0PPB8_ORYRU; Uncharacterized protein
STRINGORUFI05G22440.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-51G2-like family protein