PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G21190.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 260aa    MW: 27529 Da    PI: 4.9006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G21190.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-1866114355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+Wv+eIr+ps    r kr++lg+fg+a +Aa a+++a+ ++ g
  ORUFI05G21190.3  66 YRGVRQRR-WGKWVSEIREPS----RgKRHWLGTFGSAVDAALAYDKAAASILG 114
                      9****998.**********84....36**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.08765122IPR001471AP2/ERF domain
SMARTSM003803.9E-3465128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2865123IPR001471AP2/ERF domain
PRINTSPR003673.2E-116677IPR001471AP2/ERF domain
CDDcd000182.81E-1866121No hitNo description
SuperFamilySSF541713.14E-2066122IPR016177DNA-binding domain
PfamPF008472.6E-1166113IPR001471AP2/ERF domain
PRINTSPR003673.2E-11104124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1902600Biological Processhydrogen ion transmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0015299Molecular Functionsolute:proton antiporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAAGEGDVGM EVETKAPAMP PPPPASSSAA RKKQARAKNG DTPEPDAAGG ARARASRRAK  60
RGPGSYRGVR QRRWGKWVSE IREPSRGKRH WLGTFGSAVD AALAYDKAAA SILGPRAVLN  120
FPAFSPPAAA IAAPEQREPP FCSPATTAAA TAPEQRQTPG CSPAAVAGSG GGAVFEERDV  180
KPVVLPLPLP AILQGGGGTE AMAQHWDWEW DASWPELEMF ECLDDIAMYL DVDAVMTTRD  240
CKVEELDADI VDSPLWTLSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1765122563ATERF1
3gcc_A5e-1765122563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025590.0AK102559.1 Oryza sativa Japonica Group cDNA clone:J033097H15, full insert sequence.
GenBankCT8342420.0CT834242.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638470.11e-124dehydration-responsive element-binding protein 2D
RefseqXP_015638471.11e-124dehydration-responsive element-binding protein 2D
SwissprotQ65WX11e-125DRE2D_ORYSJ; Dehydration-responsive element-binding protein 2D
TrEMBLA0A0E0PNU40.0A0A0E0PNU4_ORYRU; Uncharacterized protein
STRINGOGLUM05G21040.21e-133(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.13e-14DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]