PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G20120.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 534aa    MW: 57612.3 Da    PI: 8.4701
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G20120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.41.6e-103563931954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  ORUFI05G20120.1 356 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 393
                      554459******************************88 PP
2BELL91.96.4e-30223292372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +e q +k++L+sl+e V+krY+qy++qlq+v+ssFe+vagl +a+p++s+Al+++S+hF+ Lk  i +q+
  ORUFI05G20120.1 223 AEQQWRKTRLISLMEDVCKRYRQYYQQLQAVVSSFETVAGLSNAAPFASMALRTMSKHFKYLKGIILNQL 292
                      58899*************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.5E-33151290IPR006563POX domain
PfamPF075263.5E-36156288IPR006563POX domain
PROSITE profilePS5007112.455334397IPR001356Homeobox domain
SMARTSM003891.4E-11337401IPR001356Homeobox domain
CDDcd000867.14E-14337398No hitNo description
SuperFamilySSF466893.89E-17339404IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-29340401IPR009057Homeodomain-like
PfamPF059204.6E-19354393IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSSAAGGGGG YGGGGGEHQH QQQHHHLLLG QAAGQLYHVP QHSRREKLRF PPDHPAESPP  60
PPPPGSWPLP PAFYSYASSS SSYSPHSPTL AHAQLVAHGM PPGAATSGGA QIPSQNFALS  120
LSSASSNPPP TPRRQFGGGG GGAAGPYGPF TGYAAVLGRS RFLGPAQKLL EEICDVGGRP  180
AQLDRGSDEG LLDVDAMEAA GSVDHEMDGS DRAVADAVTV SGAEQQWRKT RLISLMEDVC  240
KRYRQYYQQL QAVVSSFETV AGLSNAAPFA SMALRTMSKH FKYLKGIILN QLRNTGKGAT  300
KDGLGKEDTA NFGLMGGGAG LLRGNNVNSF SQPHNIWRPQ RGLPERAVSV LRAWLFEHFL  360
HPYPTDSDKQ MLAKQTGLTR NQVSNWFINA RVRLWKPMVE EIHNLEMRQL QKNPSLDKNQ  420
LSMQHTQHSS DSSGKPCDPS NSLQGQSSSM TRNHSISASR HIEDGLSQMP HDISGQNNNR  480
AYIAEPLPAA LPLNLAHRFG LEDVSDAYVM SSFGGQDRHF TKEIGGHLLH DFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-17343400158Homeobox protein Meis1
4xrs_B3e-17343400158Homeobox protein Meis1
5bng_A3e-17343401159Homeobox protein Meis2
5bng_B3e-17343401159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009160.0AK100916.1 Oryza sativa Japonica Group cDNA clone:J023133E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637721.10.0BEL1-like homeodomain protein 9
TrEMBLA0A0E0PNE50.0A0A0E0PNE5_ORYRU; Uncharacterized protein
STRINGORUFI05G20120.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-68TALE family protein