PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G19800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 34031.2 Da PI: 7.0058 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.5e-08 | 38 | 82 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g+W++eE + + +a + l + +W+++a ++ g+t ++ ++ ORUFI05G19800.1 38 GAWSQEENKVFEQALAALDRNdpeRWERVALLLP-GKTVADVMTHY 82 79*****************99*************.********999 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.6e-14 | 152 | 196 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky ORUFI05G19800.1 152 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 196 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.8E-7 | 36 | 88 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.249 | 38 | 86 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.8E-5 | 38 | 82 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.23E-9 | 38 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.99E-6 | 39 | 82 | No hit | No description |
PROSITE profile | PS51294 | 17.568 | 145 | 201 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-17 | 147 | 201 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-17 | 148 | 199 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.8E-13 | 149 | 199 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-12 | 149 | 195 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.4E-12 | 152 | 196 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.12E-11 | 152 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MMKESYMEVL PPAPAHYFVG QAAAAGGWFL PDRRGGGGAW SQEENKVFEQ ALAALDRNDP 60 ERWERVALLL PGKTVADVMT HYDDLENDVC FIEAGLVPFP HYGAAGGGGG SGFTLDWDGG 120 DDPAGLGFKR SCYMVGGKRA RGPDQERKKG VPWTEEEHKL FLMGLKKYGR GDWRNISRNF 180 VTSRTPTQVA SHAQKYFIRL NSGGKDKRRS SIHDITTVNL PDDDHGNPSP SPPPSVLTAH 240 SSSSAAAVSE QFGVLVDGKP PPPPLGRGAG HHHFMPHPYA QVKIEAGNSH VAGGGRLDDS 300 VLVQMQCGQL MQPLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-17 | 34 | 107 | 5 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068138 | 0.0 | AK068138.1 Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637475.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 4e-81 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0E0PNA9 | 0.0 | A0A0E0PNA9_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q60EH1 | 0.0 | Q60EH1_ORYSJ; Os05g0449900 protein | ||||
STRING | ORUFI05G19800.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS05T0449900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-81 | MYB family protein |
Publications ? help Back to Top | |||
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