PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI05G19430.3

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 521aa MW: 57602.2 Da PI: 9.1293

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI05G19430.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.4e-11	211	240	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ ORUFI05G19430.3 211 AKTERRLAQNREAARKSRLRKKAYVQQLET 240 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	208	284	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	210	254	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-7	211	241	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.45E-6	212	255	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.3E-7	212	241	No hit	No description
PROSITE pattern	PS00036	0	215	230	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.0E-29	293	367	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MGLRVAYWPK GLYLNASSPA TRIVSRSSRP SAAVAGGRRR PLPLKKGGNN TLNIRPLPPL 60 AATESTARLL SSTAGGVRLH RSHGKSCIGL QYKTAGYLAA RPPTLEIFPS WPMSHLQEPY 120 SNSQSVGSTT DSSSAQNTMS QAELVSPASM RSDSGQEQQQ QEVLMVTIDD YNYKQGLGAA 180 IATAPSFQQH AGGLDMRKHG STRKDGKLLD AKTERRLAQN REAARKSRLR KKAYVQQLET 240 SRIRLQQIEQ ELQRARSQGL FPGGCSAPGD MSSGAVMFDM EYTRWIDDDS KCMAELQGAL 300 QAQLPDGNLG AIVEECMRHY DELFHLRAVL ASSDVFHLMT GMWAAPAERC FLWMAGFRPS 360 EILKMLIPQL DPLTEQQLMG MCSLQQSSEQ TEEALAQGLH QLHQSLADAV GGGPLNDGAD 420 VANYTGLMAL ALGRLENLES FYRQADNLRQ ETLHHMRRIL TTRQTARCFL SIGEYNRRLR 480 ALSSLWASRP RENFIATENV SPTGTEFQVI QQSQQNQFSG F

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MGLRVAYWPK GLYLNASSPA TRIVSRSSRP SAAVAGGRRR PLPLKKGGNN TLNIRPLPPL  60
AATESTARLL SSTAGGVRLH RSHGKSCIGL QYKTAGYLAA RPPTLEIFPS WPMSHLQEPY  120
SNSQSVGSTT DSSSAQNTMS QAELVSPASM RSDSGQEQQQ QEVLMVTIDD YNYKQGLGAA  180
IATAPSFQQH AGGLDMRKHG STRKDGKLLD AKTERRLAQN REAARKSRLR KKAYVQQLET  240
SRIRLQQIEQ ELQRARSQGL FPGGCSAPGD MSSGAVMFDM EYTRWIDDDS KCMAELQGAL  300
QAQLPDGNLG AIVEECMRHY DELFHLRAVL ASSDVFHLMT GMWAAPAERC FLWMAGFRPS  360
EILKMLIPQL DPLTEQQLMG MCSLQQSSEQ TEEALAQGLH QLHQSLADAV GGGPLNDGAD  420
VANYTGLMAL ALGRLENLES FYRQADNLRQ ETLHHMRRIL TTRQTARCFL SIGEYNRRLR  480
ALSSLWASRP RENFIATENV SPTGTEFQVI QQSQQNQFSG F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881203.1	0.0	transcription factor TGAL5 isoform X14
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0E0PN56	0.0	A0A0E0PN56_ORYRU; Uncharacterized protein
STRING	ORUFI05G19430.2	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-136	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]