PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G19350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 263aa    MW: 29260.1 Da    PI: 6.2938
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G19350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.64.3e-3541261128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppG+rF Pt+eelv++yL++k++g +   ++e+vi+ +d ++          +++ + w++F++r++++a+g r++r+t sgyWka g+   v
  ORUFI05G19350.1   4 LPPGYRFYPTEEELVCFYLRHKLDGGRrvPDIERVIPVADAHQ---GA----WTGDGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGWV 90 
                      79***********************995444444455544443...33....3457789*********************************** PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s++g+ +g+kkt+vfy+grap g kt+W m+eyr+
  ORUFI05G19350.1  91 YSSDGRPIGTKKTMVFYRGRAPAGAKTKWKMNEYRA 126
                      **********************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-423158IPR003441NAC domain
PROSITE profilePS5100540.0684159IPR003441NAC domain
PfamPF023653.7E-245125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGELPPGYRF YPTEEELVCF YLRHKLDGGR RVPDIERVIP VADAHQGAWT GDGEPWFYFC  60
PRQEREARGG RPSRTTPSGY WKAAGTPGWV YSSDGRPIGT KKTMVFYRGR APAGAKTKWK  120
MNEYRAFEED DDNAAAAAPA QNHYLQTRSD FSLCRLYTRS GCPRQFDRRP PSSSVAGGGG  180
ENRAAPSSTA AAFANEDAAE SSGKSQKRKR SAPDDRLDST SSSDDNGGCD GSMLQQQQQR  240
QRGTDEELVE CSMTDWADLL DWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-27415917165NO APICAL MERISTEM PROTEIN
1ut4_B1e-27415917165NO APICAL MERISTEM PROTEIN
1ut7_A1e-27415917165NO APICAL MERISTEM PROTEIN
1ut7_B1e-27415917165NO APICAL MERISTEM PROTEIN
4dul_A1e-27415917165NAC domain-containing protein 19
4dul_B1e-27415917165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0637030.0AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence.
GenBankJN1854420.0JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638341.11e-161NAC domain-containing protein 90
SwissprotQ9FMR34e-58NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0E0HF630.0A0A0E0HF63_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PN460.0A0A0E0PN46_ORYRU; Uncharacterized protein
STRINGORUFI05G19350.10.0(Oryza rufipogon)
STRINGONIVA05G19100.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-58NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]