PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G18190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 309aa MW: 33191.5 Da PI: 7.9776 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.5 | 2.7e-32 | 18 | 101 | 1 | 85 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelv++yL+++++g ++ + +i+evd+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ sgyWk ORUFI05G18190.1 18 LPPGFRFHPTDEELVMHYLCRRCAGLPIAV-PIIAEVDLYKFDPWHLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKG 101 79**************************99.88***************7666789****************************95 PP | |||||||
2 | NAM | 27 | 1.2e-08 | 105 | 126 | 107 | 128 |
NAM 107 vfykgrapkgektdWvmheyrl 128 vfy g+apkg kt+W+mheyrl ORUFI05G18190.1 105 VFYAGKAPKGDKTNWIMHEYRL 126 8*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-54 | 13 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.234 | 18 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-20 | 19 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MSGGGEGAAA AERQELQLPP GFRFHPTDEE LVMHYLCRRC AGLPIAVPII AEVDLYKFDP 60 WHLPRMALYG EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK GARAVFYAGK APKGDKTNWI 120 MHEYRLADVD RSARKKNTLR LDDWVLCRIY NKKGGVEKPS GGGGGERSNM MSHGETASAG 180 SPPEQKPAVL PPPPPPYAAA APFSELAAFY DVRPSDSVPR AHGADSSCSE HVLTTSASSG 240 GVVERPEVQS QPKIAEWERT FAGAAAPAGA VSTAGPILGQ LDPAAAAAAV AGGGDPLLQD 300 ILMYWGKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-67 | 15 | 158 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-67 | 15 | 158 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-67 | 15 | 158 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-67 | 15 | 158 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-67 | 15 | 158 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-67 | 15 | 158 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-67 | 15 | 158 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-67 | 15 | 158 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-67 | 15 | 158 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-67 | 15 | 158 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-67 | 15 | 158 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-67 | 15 | 158 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-67 | 15 | 158 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-67 | 15 | 158 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses (PubMed:20632034). Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus (PubMed:17587305). Transcription activator involved tolerance to cold and salt stresses (PubMed:18273684). Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, accumulation of phosphoadenosine phosphosulfate and glycosylation in roots (PubMed:27892643). Controls root growth at early vegetative stage through chromatin modification and histone lysine deacytaltion by HDAC1 (PubMed:19453457). {ECO:0000269|PubMed:17587305, ECO:0000269|PubMed:18273684, ECO:0000269|PubMed:19453457, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress, cold stress and abscisic acid (ABA) (PubMed:20632034, PubMed:27892643). Induced by methyl jasmonate (PubMed:20632034, PubMed:11332734). Induced by infection with the rice blast fungus Magnaporthe oryzae (PubMed:11332734). {ECO:0000269|PubMed:11332734, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107746 | 0.0 | AK107746.1 Oryza sativa Japonica Group cDNA clone:002-132-H04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637488.1 | 0.0 | NAC domain-containing protein 48-like | ||||
Swissprot | Q7F2L3 | 1e-136 | NAC48_ORYSJ; NAC domain-containing protein 48 | ||||
TrEMBL | A0A0E0PMP2 | 0.0 | A0A0E0PMP2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G18190.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3417 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 3e-89 | NAC family protein |