PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G17830.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 280aa    MW: 28087.4 Da    PI: 8.1341
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G17830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601407.8e-4440138199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++l
  ORUFI05G17830.1  40 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQDL 133
                      7********************************************************************************************* PP

           DUF260  95 allke 99 
                      ++++ 
  ORUFI05G17830.1 134 SRARF 138
                      99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.86139140IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-4440136IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAASSSASSL PLSSGSVITV SSSPAVGASS GGGGGGTGSP CAACKFLRRK CQPDCVFAPY  60
FPPDNPQKFV HVHRVFGASN VTKLLNELHP YQREDAVNSL AYEADMRLRD PVYGCVGVIS  120
VLQHQLRQLQ QDLSRARFEL SKYQAAVAVS SSNGQAAAAA AMVDHFIGSA VQPNCTQNFI  180
SGGGVAAAAI GVGGGAGGGF VNDHHQFSAV QMLARSYDGE SAVARLGGAV NVSGGGGYEF  240
GYSSAMGGAG GPMSGLGPLG GGTFLKPGTA GGGDRPTAAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-55361437114LOB family transfactor Ramosa2.1
5ly0_B5e-55361437114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640070.11e-149LOB domain-containing protein 6
RefseqXP_015640071.11e-149LOB domain-containing protein 6
RefseqXP_025881387.11e-149LOB domain-containing protein 6
SwissprotQ32SG31e-108LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A0E0PMJ90.0A0A0E0PMJ9_ORYRU; Uncharacterized protein
STRINGORUFI05G17830.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.46e-54LBD family protein