PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G13870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 21734.4 Da PI: 12.3274 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.9 | 9e-12 | 49 | 82 | 2 | 39 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgta 39 +y+GVr+++ +g+WvAeIr+p++ r r +lg+f ta ORUFI05G13870.1 49 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFATA 82 59****999.**********954...5********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.2E-8 | 49 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-10 | 49 | 82 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 14.618 | 49 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.11E-13 | 49 | 82 | No hit | No description |
Pfam | PF00847 | 1.7E-6 | 49 | 81 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-16 | 49 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-6 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0010353 | Biological Process | response to trehalose | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0010896 | Biological Process | regulation of triglyceride catabolic process | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0032880 | Biological Process | regulation of protein localization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MEPSDDACTV AAPAAETAAS SSGAGGGGGG GRTKKKAAGK GGPENGKFRY RGVRQRSWGK 60 WVAEIREPRK RSRKWLGTFA TAXPPPPLRP LLPRPPHLHP AFHHQPFHHH LLQPQPPPPP 120 PPLYYAATAS TSTVTTTTTA PPPQLAAAAP AAVLVAAAVS STAETQRRRR RRRRRRPRGA 180 STAATRRTTR RRYCGASRTP DE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 171 | QRRRRRR |
2 | 167 | 175 | RRRRRRRRR |
3 | 167 | 177 | RRRRRRRRRPR |
4 | 168 | 175 | RRRRRRRR |
5 | 169 | 175 | RRRRRRR |
6 | 170 | 177 | RRRRRRPR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 1e-138 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0PL55 | 1e-136 | A0A0E0PL55_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G13870.1 | 1e-137 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13303 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 1e-17 | ERF family protein |