PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G12850.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 567aa    MW: 60360.6 Da    PI: 3.7817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G12850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.31.8e-2471461128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 
                      l pG++F+P+d++lv +yL ++++g++l+l+ vi e+d +++ Pw+L +  +++ +e +fF++++ k+ +gkr++r +   g+W+ + +  d e
  ORUFI05G12850.1   7 LLPGLKFDPSDHDLVGRYLLRRLQGQPLPLDGVILEADPLSAPPWKLLAD-HGRGDEAFFFAEAHAKNGKGKRQKRtVEGGGFWQGQNTcvDGE 99 
                      579***************************999**************743.456789*******************555599**9554422444 PP

              NAM  92 vlsk.........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                       l+          +         + k +L f+  + ++g ++ Wvmhey++
  ORUFI05G12850.1 100 RLCVpddgdgsggG--GggleiAWRKYVLSFFA-NGERG-SSGWVMHEYAV 146
                      44445666655550..055565899999****4.44444.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-304165IPR003441NAC domain
PROSITE profilePS5100527.5727165IPR003441NAC domain
PfamPF023651.3E-149145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAAADGLLPG LKFDPSDHDL VGRYLLRRLQ GQPLPLDGVI LEADPLSAPP WKLLADHGRG  60
DEAFFFAEAH AKNGKGKRQK RTVEGGGFWQ GQNTCVDGER LCVPDDGDGS GGGGGGLEIA  120
WRKYVLSFFA NGERGSSGWV MHEYAVTAPD GLASSQLRLY RVRFSGYGKK RKREPQCPGA  180
HGDDDGELQC APPPRSMAET ALLEERGPLP HPVLGPASVV DQCTDQGSSG VIDDSSLVFR  240
DLPDLIDLPV AEEADASHGA ETALLNEHLP LPPPQLFVPP TAVPLDLADD SNGADQNSYG  300
MMGDDQLLLP DLPGTINDDM PDLFVSQAEE ASAVPAISYH SSGFMGNEVA ALSDFELPES  360
YSSSDAMDGE ALALSNYEFP ESFEEDLSCI DFATANASSL GFPMDGYPMD ELFDDMPDQG  420
SSGAMDDSSV VFRDLPGLIN LPAAEEADAI GDAETALLRD LADDSNGTDR NSYGVMGDDQ  480
DRLLLPEIPR RIDMPDLFVS QAEEAGLGGG AALDSSSGAM DGEALALSDF EFPESVEEVL  540
SCMDFSTVDM SFLDVPIDEL LDDLPAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343460.0AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.10.0uncharacterized protein LOC107275325
TrEMBLA0A0E0PKT70.0A0A0E0PKT7_ORYRU; Uncharacterized protein
TrEMBLQ5W6T50.0Q5W6T5_ORYSJ; Os05g0325300 protein
STRINGORUFI05G12850.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137