PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI05G12600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 191aa MW: 21546.9 Da PI: 10.8433 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.2 | 1e-06 | 15 | 35 | 37 | 57 |
CTS-HHHHHHHHHHHHHHHHC CS Homeobox 37 lgLterqVkvWFqNrRakekk 57 +gLt++q ++WF+ rR k++k ORUFI05G12600.1 15 TGLTDKQLQMWFCHRRLKDRK 35 69*****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.199 | 1 | 36 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.08E-6 | 2 | 42 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.78E-4 | 2 | 36 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-5 | 15 | 35 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MKTPYQLEVL KRTYTGLTDK QLQMWFCHRR LKDRKPPPKR QQLEEEVHVP VMAPPPVLPP 60 PLPHSELTMA PGGMYGEQLL PSSSRRGTGR PSAILDMSDL QCLPLLTSHG TKSSPGEMIR 120 LRWDTTDSEE VVRTRIPSST PGQHKARVLP AAGRGWPDTR GPPASPPWPT RCPLSLHTYP 180 PRRHRLRQPS V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071302 | 1e-176 | AK071302.1 Oryza sativa Japonica Group cDNA clone:J023088K17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0PKR1 | 1e-133 | A0A0E0PKR1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G12600.1 | 1e-134 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23525 | 4 | 4 |