PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G11730.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 327aa    MW: 36654.2 Da    PI: 5.0985
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G11730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC72.56.4e-2331128296
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      ++ fw +    ie ++  ++h lP+  +k++++  +d  m+sa++P++++k celf+ eltlr+w+ a++ +r  +  +dia+a+t t+ + fl
  ORUFI05G11730.1  31 MEEFWRRSqeqIEASAGNHEHILPIDCVKNVIRPKNDAMMLSADTPTFVTKLCELFVQELTLRAWVCANSHNRDIILGTDIAEAITTTESYHFL 124
                      7789976523377777778999************************************************************************ PP

            NF-YC  93 vdiv 96 
                       ++ 
  ORUFI05G11730.1 125 GNVL 128
                      8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.62E-1610124IPR009072Histone-fold
PfamPF008082.6E-853115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-1753128IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAIPTKEEVE QNEEDNTFSR LQLLAQQRHA MEEFWRRSQE QIEASAGNHE HILPIDCVKN  60
VIRPKNDAMM LSADTPTFVT KLCELFVQEL TLRAWVCANS HNRDIILGTD IAEAITTTES  120
YHFLGNVLRS HKALGSTAPD IDTSARKHIK LDQMTSLYHP TQEMQASRLA GYPPHVPIYP  180
PIGQMGTQHK LSPFTFMMQG ESLLNMKREK SLVNEVMVCT NKMSINNFDG ATSIGGGSSS  240
DVAIVVQQGE TTHPFSSQNA CPSLEDNYVV PMPTGHVQSF SPPTNINVKK LHQEEKNIYS  300
QDVAEEDMSN ESLEGSQKDE DLFLHEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1365250.0AC136525.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0585E02, complete sequence.
GenBankAC1454760.0AC145476.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1023E01, complete sequence.
GenBankAK2421360.0AK242136.1 Oryza sativa Japonica Group cDNA, clone: J075149P12, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankKF7373220.0KF737322.1 Oryza sativa Japonica Group clone KCS267A05 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639189.10.0uncharacterized protein LOC4338359
TrEMBLA0A0E0PKE50.0A0A0E0PKE5_ORYRU; Uncharacterized protein
TrEMBLA0A2H4C0A60.0A0A2H4C0A6_ORYSA; Nuclear factor Y transcription factor
TrEMBLQ0DJB50.0Q0DJB5_ORYSJ; Os05g0304800 protein
STRINGORUFI05G11730.10.0(Oryza rufipogon)
STRINGOS05T0304800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-18nuclear factor Y, subunit C4