PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G07170.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 378aa    MW: 39399.8 Da    PI: 5.6933
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G07170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.6e-064078537
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      C+ +e  e++  C  ++  lC+ C   +H        H
  ORUFI05G07170.1 40 LCSACEAAEASVLCCADEAALCARCDRDIHAAnrlagkH 78
                     7******99*********************544555555 PP
2zf-B_box315.1e-10104144337
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++kC+ ++e ++ +fC +++ llC++C ++ H        H
  ORUFI05G07170.1 104 PPKCDICQESHAYFFCLEDRALLCRSCDVAVHTAnafvsaH 144
                      789******99*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1963683IPR000315B-box-type zinc finger
SMARTSM003366.3E-103683IPR000315B-box-type zinc finger
CDDcd000215.22E-54071No hitNo description
SuperFamilySSF578457.32E-599142No hitNo description
SMARTSM003361.4E-15102149IPR000315B-box-type zinc finger
PfamPF006431.4E-8104136IPR000315B-box-type zinc finger
CDDcd000212.90E-9106149No hitNo description
PROSITE profilePS501199.542107149IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSPPPPPYYH HLLLLRSSPT TTGGGARVLA AAELARMKLL CSACEAAEAS VLCCADEAAL  60
CARCDRDIHA ANRLAGKHLR LPLLSPASSS SSSAAALAPP PPSPPKCDIC QESHAYFFCL  120
EDRALLCRSC DVAVHTANAF VSAHRRFLLT GVQVGQEQDE HSPDPPEPSP PPPPPPPASK  180
SDHPAPLYGE GGGGFSWDAA DSPAAGGLPD WSAVVDQFGS PPPPRHTDTA TVTTPPPTKR  240
SPRAPAFGGQ GGMMDWPLGE FFGGFTDFTG GFGFGFGDSG TSKADSGKLG GSTDGSPYYR  300
SSSEDDRNAD ELFGQVPEIQ WSVPELPSPP TASGLHWQRH PAATHGGGGG GPDTTAFVPD  360
ICSPDSCFPA TTSKRRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068650.0AK106865.1 Oryza sativa Japonica Group cDNA clone:002-118-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638101.10.0B-box zinc finger protein 22
TrEMBLA0A0E0PIT30.0A0A0E0PIT3_ORYRU; Uncharacterized protein
TrEMBLQ6ATK00.0Q6ATK0_ORYSJ; Os05g0204600 protein
STRINGORUFI05G07170.10.0(Oryza rufipogon)
STRINGOS05T0204600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-42light-regulated zinc finger protein 1