PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G06870.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 416aa    MW: 44516 Da    PI: 9.6724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G06870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11248292554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h   Er+RR+++N++f  Lr++lP+a     +K +Ka++L +A +Y++ L
  ORUFI05G06870.1 248 HVLSERKRREKLNDSFKALRDVLPPA-----TKKDKASVLMRAKDYVNVL 292
                      7789*********************9.....9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16241312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.434243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.12E-11245297No hitNo description
Gene3DG3DSA:4.10.280.101.2E-14247310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9248292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDGGSWMLKA AAAGDMHGGA GDTMIRCSWS DMATTDQLLR HHEQEPAMTM MMNSQSQAMQ  60
QQLSQAIFMI NSSCLLLIYM LMDMEEHDHQ YATPPSPSSS SFRSFSAGTT TTTTSRDDNS  120
SLMLAAAAAS CHHQTTEVSS QILLPRPGQA ARRSSGGHGA AAAATAFRPY SRYLGPKKHL  180
LRRPGAATTA TGGGGGQRAF KKAISVLSKI HAARLAQYYQ IMEMAARASP AATAGGGGGE  240
NQQLQLQHVL SERKRREKLN DSFKALRDVL PPATKKDKAS VLMRAKDYVN VLKARIAELE  300
EKNRKLSESQ QLHAGDGDGE RDDGPDDDKI EVNTSRSAAD QGSSPNKCQE LHLKIVLGSS  360
SGCSAMDAVA GILQGLNEKR DVSLLATGHN SSSSSSSGRR RLLPRAKSSQ QPAGTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256ERKRRE
2252257RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076750.0AK107675.1 Oryza sativa Japonica Group cDNA clone:002-132-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638951.10.0transcription factor PIF1
TrEMBLA0A0E0PIQ20.0A0A0E0PIQ2_ORYRU; Uncharacterized protein
STRINGORUFI05G06870.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-17bHLH family protein