PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G05970.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25556.2 Da    PI: 6.6331
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G05970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.8e-292272151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien++nrqvtfskRr gilKKA E+SvLCdaev v+ifss gkly+y+s
  ORUFI05G05970.1 22 KRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCS 72
                     79***********************************************96 PP
2K-box68.13e-2384176196
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                      yq++sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL  +e++L++++ ++ +k ++++ +   + ++ e+e++    +L
  ORUFI05G05970.1  84 YQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDKLMDHWER---HDKMLEDENKLLAFKL 174
                      89999999*********************************************************9987766654...5566666666666666 PP

            K-box  95 rk 96 
                      ++
  ORUFI05G05970.1 175 HQ 176
                      65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.0391474IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-421473IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-3415109IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001670IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-301636IPR002100Transcription factor, MADS-box
CDDcd002651.04E-401893No hitNo description
PfamPF003195.9E-252370IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-303651IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-305172IPR002100Transcription factor, MADS-box
PfamPF014868.0E-1495174IPR002487Transcription factor, K-box
PROSITE profilePS5129711.91497180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MWLEEGGGGG GGGMGRGKIE IKRIENSTNR QVTFSKRRSG ILKKAREISV LCDAEVGVVI  60
FSSAGKLYDY CSPKTSLSRI LEKYQTNSGK ILWDEKHKSL SAEIDRIKKE NDNMQIELRH  120
LKGEDLNSLQ PKELIMIEEA LDNGIVNVND KLMDHWERHD KMLEDENKLL AFKLHQQDIA  180
LSGSMRDLEL GYHPDRDFAA QMPITFRIHG CLQTQNIFLV ASIND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-201499178Myocyte-specific enhancer factor 2B
1tqe_Q4e-201499178Myocyte-specific enhancer factor 2B
1tqe_R4e-201499178Myocyte-specific enhancer factor 2B
1tqe_S4e-201499178Myocyte-specific enhancer factor 2B
6c9l_A4e-201499178Myocyte-specific enhancer factor 2B
6c9l_B4e-201499178Myocyte-specific enhancer factor 2B
6c9l_C4e-201499178Myocyte-specific enhancer factor 2B
6c9l_D4e-201499178Myocyte-specific enhancer factor 2B
6c9l_E4e-201499178Myocyte-specific enhancer factor 2B
6c9l_F4e-201499178Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708940.0AK070894.1 Oryza sativa Japonica Group cDNA clone:J023072H23, full insert sequence.
GenBankRICOSMA0.0L37526.1 Oryza sativa MADS-box protein (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645133.11e-140PREDICTED: MADS-box transcription factor 2
RefseqXP_015623988.11e-140MADS-box transcription factor 2 isoform X1
SwissprotQ407021e-141MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLA0A0E0PID41e-165A0A0E0PID4_ORYRU; Uncharacterized protein
STRINGORUFI05G05970.11e-166(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.16e-64MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]