PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G04670.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 270aa    MW: 29881.8 Da    PI: 9.7832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G04670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-1170114554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  +++Lr++lP a     k ++Ka+ L  +v+ +k+L
  ORUFI05G04670.1  70 HSEAERRRRERINAHLATLRRILPDA-----KQMDKATLLASVVNQVKHL 114
                      9*************************.....67*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.40565114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1269123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1170117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-970114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1071120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.394156236IPR002912ACT domain
Gene3DG3DSA:3.30.70.2601.2E-5156205No hitNo description
SuperFamilySSF550211.77E-5157209No hitNo description
CDDcd048731.87E-6158193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAACQQQIWQ EGKQQQHLHH GGYDDLSSVY RGTVVLPRRQ GGLAPEPPPP RPSSSSGRSA  60
AAQATAMRIH SEAERRRRER INAHLATLRR ILPDAKQMDK ATLLASVVNQ VKHLKTRATE  120
ATTPSTAATI PPEANEVTVQ CYAGGEHTAA ARIYVRATVS CDDRPGLLAD IAATFRRLRL  180
RPLSADMSCL GGRTRHAFVL CREEEEEEDA AAEARPLKEA VRQALAKVAL PETVYGGGRS  240
KRQRLMMESR YSTAVVHTHV DPQYCWYNSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106190.0AK110619.1 Oryza sativa Japonica Group cDNA clone:002-168-H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638377.11e-162putative transcription factor bHLH107
RefseqXP_015638378.11e-162putative transcription factor bHLH107
RefseqXP_015638379.11e-162putative transcription factor bHLH107
TrEMBLA0A0E0PHZ90.0A0A0E0PHZ9_ORYRU; Uncharacterized protein
STRINGORUFI05G04670.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-22bHLH family protein